View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11577_high_1 (Length: 671)
Name: NF11577_high_1
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11577_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 17 - 667
Target Start/End: Original strand, 36605984 - 36606640
Alignment:
| Q |
17 |
aacacttctccaacatttttgtcgtacataaaatgccccaactctacataaaatggcatgagatggtgcaacttgacaactataaaaataattagttgca |
116 |
Q |
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||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
36605984 |
aacacttcttcaacatttttgtcatacagaaaatgccccaactctacataaaatggcatgagatgatgcaacttgacaactataaagataattagttgca |
36606083 |
T |
|
| Q |
117 |
accaaacacacttacaagcttcgcctaaaggtaattaaataataattattaattaattttccttttctcttcataaaacaatagtgtcggggacattgga |
216 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||||||| ||| |||| || |||||||||||||||||||||||||||| ||||||||| |
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| T |
36606084 |
accaaacacacttacaagcttcacctaaaagtaattaaataataattatcaatcaattatctttttctcttcataaaacaatagtgtcggtgacattgga |
36606183 |
T |
|
| Q |
217 |
aaaatgatgactttatttttacaattggacaataagtttatgattgttgaagtctttaaagtggtgttcaccttggataattgtggcagatggcgacatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36606184 |
aaaatgatgactttatttttacaattggacaataagcttatgattgttgaagtcttgacagtggtgttcaccttggataattgtggcagatggcgacatt |
36606283 |
T |
|
| Q |
317 |
ctccatgcttgggcaataaactgacataaagattacaaatgacattatccatgcttgatataaaacacttataatgtgaaggtatgtattgtagagatca |
416 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36606284 |
ctccaagcttgggcaataaacggacataaagattacaaatgacattctccatgcttgatataaaacacttataatgtgaaggtatgtattgtatagatca |
36606383 |
T |
|
| Q |
417 |
ttttggccatgaagcaaaagtaggtatataacacgagcatggagaatgctagccacatgtagtgatttgagatgacctgaccagtcatactcattgataa |
516 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36606384 |
ttttggccatgaagcaaaagtaggtatataacaggagcatggagaatgctaaccacatgtagtgatttgagatgacctgaccagtcatactcattaataa |
36606483 |
T |
|
| Q |
517 |
tgatttatcatgtgaccttaacctatgttttgatatccatgttctttccctatattgttgtcaatccttaacgattaacaatgaagcaa------tacct |
610 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| ||||| |
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| T |
36606484 |
tgatttatcatgtgaccttaacttatgttttgatatccatgttctttccatatatagttgtaaatccttaacgattaacaatgaagcaagttctctacct |
36606583 |
T |
|
| Q |
611 |
tcactaaaaagaacagtgaagcaattcaattaattcggtttgagttatcctatgctt |
667 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
36606584 |
tcactaaaaagaacagtgaagcaattcaattaattcaatttgagttatcttatgctt |
36606640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 173; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 110 - 481
Target Start/End: Complemental strand, 27539980 - 27539604
Alignment:
| Q |
110 |
agttgcaaccaaacacacttacaagcttcgcctaaaggtaattaaataataat-tattaattaattttccttttctcttcataaaacaatagtgtcgggg |
208 |
Q |
| |
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|||||||||||||||||||| |||||||| |||||||||||||||| | || | || ||| |||| || |||| ||||||| ||||| ||||||| | |
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| T |
27539980 |
agttgcaaccaaacacacttgcaagcttcacctaaaggtaattaaagactattctagcaatcaattctctttttttcttcatcaaacattagtgtcaatg |
27539881 |
T |
|
| Q |
209 |
acattggaaaaatgatgactttatttttacaattggacaataagtttatgattgttgaagtctttaaagtggtgttcaccttggataattgtggcagatg |
308 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||| | ||| ||||||| ||||| | | |||||||||||||||||||||||||||| |
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| T |
27539880 |
acattgggaaaatgatgactttatttttacatttggacaataagcatttgactgttgaatactttacaatattgttcaccttggataattgtggcagatg |
27539781 |
T |
|
| Q |
309 |
gcgacattctccatgcttgggcaataaactgacataaagattacaaatgacattatccatgcttgat------ataaaacacttataatgtgaaggtatg |
402 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||| |
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| T |
27539780 |
gcgacattctccatgtttgggcaataaactgacataaagattacaaatgacattatctatgcttgatataattataaaacacttatgatgtgaaggtatg |
27539681 |
T |
|
| Q |
403 |
tattgtagagatcattttggccatgaagcaaaagtaggtatataacacgagcatggagaatgctagccacatgtagtga |
481 |
Q |
| |
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||| ||||||||||| |||| ||||||||||||||| |||| || |||||| | |||||||| ||||||||||||| |
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| T |
27539680 |
tatcgtagagatcatattggttgtgaagcaaaagtagg--tatagcaagagcatagtgaatgctaaccacatgtagtga |
27539604 |
T |
|
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