View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11577_high_10 (Length: 402)
Name: NF11577_high_10
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11577_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Original strand, 14490123 - 14490497
Alignment:
| Q |
16 |
cagaactgtaattaatagaaactatgaatggatagtcatttgaagtttgaaaatttcatatatttttctgaagttagtaaacttacatatataatcacaa |
115 |
Q |
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| T |
14490123 |
cagaactgtaattaatagaaactatgaatggatagtcatttgaagtttgaaaatttcatatatttttctgaagttagtaaacttacatat--aatcacaa |
14490220 |
T |
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| Q |
116 |
ttcaactggttccatattaaaatttgaagacaataaattatgaaaattcacgcactgtaactgttttaagtagtaactttcagaatttcatgtttctttt |
215 |
Q |
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| T |
14490221 |
ttcaactggttccatattaaaatttgaagacaataaattatgaaaattcacgcactgtaactgttttaagtagtaactttcagaatttcatgtttctttt |
14490320 |
T |
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| Q |
216 |
gaaaatctctctcaaacctaaacatgtcaaaaacatcatacaacaaatcatttatcattaacaaattattccacccaattaaagatcaatacaagagatt |
315 |
Q |
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| T |
14490321 |
gaaaatctctctcaaacctaaacaagtcaaaaacatcatacaacaaatcatttatcattaacaaattattccacccaattaaagatcaatacaagagatt |
14490420 |
T |
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| Q |
316 |
ttccttcaaaatcatataacacaaaagaatcataaaaataaggcatgtccatataattctactctctcactattctt |
392 |
Q |
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| T |
14490421 |
ttccttcaaaatcatataacacaaaagaatcataaaaataaggcatgtccatataattctactctctcactattctt |
14490497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 347
Target Start/End: Complemental strand, 44510467 - 44510405
Alignment:
| Q |
285 |
tccacccaattaaagatcaatacaagagattttccttcaaaatcatataacacaaaagaatca |
347 |
Q |
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| T |
44510467 |
tccacccaattgaagatcaacacaagagatttcccttcaaaatcatataacacagtagaatca |
44510405 |
T |
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