View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11577_high_3 (Length: 554)

Name: NF11577_high_3
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11577_high_3
NF11577_high_3
[»] chr8 (6 HSPs)
chr8 (36-177)||(11676627-11676768)
chr8 (68-179)||(11659726-11659837)
chr8 (68-179)||(11668895-11669006)
chr8 (199-323)||(11659334-11659454)
chr8 (283-323)||(11668503-11668543)
chr8 (283-323)||(31372259-31372299)
[»] scaffold0155 (1 HSPs)
scaffold0155 (365-543)||(774-966)
[»] chr4 (3 HSPs)
chr4 (427-543)||(42390515-42390630)
chr4 (283-323)||(53239133-53239173)
chr4 (362-399)||(42390668-42390705)
[»] chr1 (2 HSPs)
chr1 (195-323)||(2170142-2170265)
chr1 (200-323)||(28851126-28851245)
[»] chr7 (3 HSPs)
chr7 (195-323)||(32248959-32249083)
chr7 (199-323)||(33426463-33426583)
chr7 (227-323)||(47815556-47815650)
[»] chr6 (1 HSPs)
chr6 (199-323)||(10460846-10460966)


Alignment Details
Target: chr8 (Bit Score: 130; Significance: 4e-67; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 36 - 177
Target Start/End: Complemental strand, 11676768 - 11676627
Alignment:
Q  36 tacacatgattataacctccaatgtctacaaggaaagcaacacaagaacacaaatcattgtattacaagaatagaaacacatagatcaagacgaggctga 135  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11676768 tacacattattataacctccaatgtctacgaggaaagcaacacaagaacacaaatcattgtattacaagaataaaaacacatagatcaagacgaggctga 11676669  T
Q  136 tgaaattattaaataaattacaatgaaaaacattaatttatg 177  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  11676668 tgaaattattaaataaattacaatgaaaaacattaatttatg 11676627  T

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Target: chr8; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 11659837 - 11659726
Alignment:
Q  68 gaaagcaacacaagaacacaaatcattgtattacaagaatagaaacacatagatcaagacgaggctgatgaaattattaaataaattacaatgaaaaaca 167  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11659837 gaaagcaacacaagaacacaaatcattgtattataagaatagaaacacatagatcaagacgaggctgatgaaattattaaataaattacaatgaaaaaca 11659738  T
Q  168 ttaatttatgag 179  Q
    ||||||||||||    
T  11659737 ttaatttatgag 11659726  T

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Target: chr8; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 11669006 - 11668895
Alignment:
Q  68 gaaagcaacacaagaacacaaatcattgtattacaagaatagaaacacatagatcaagacgaggctgatgaaattattaaataaattacaatgaaaaaca 167  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11669006 gaaagcaacacaagaacacaaatcattgtattataagaatataaacacatagatcaagacgaggttgatgaaattattaaataaattacaatgaaaaaca 11668907  T
Q  168 ttaatttatgag 179  Q
    ||||||||||||    
T  11668906 ttaatttatgag 11668895  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 199 - 323
Target Start/End: Complemental strand, 11659454 - 11659334
Alignment:
Q  199 cccaaagtgcaaaactcacaagtttttagtggtactaattccatgattcagtcaaacttatttgttccatactgtcnnnnnnnnctattgaccattttaa 298  Q
    |||||| ||||||||||||||||||   ||||| ||||||| || || |||||| ||||| ||||||||| |||||        ||||||||||||||||    
T  11659454 cccaaaatgcaaaactcacaagtttg--gtggtgctaattctataatccagtcatacttacttgttccatgctgtcaaaaat--ctattgaccattttaa 11659359  T
Q  299 tttggagtattggtacatacaaata 323  Q
    |||||||||||||||||||||||||    
T  11659358 tttggagtattggtacatacaaata 11659334  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 11668543 - 11668503
Alignment:
Q  283 ctattgaccattttaatttggagtattggtacatacaaata 323  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  11668543 ctattggccattttaatttggagtattggtacatacaaata 11668503  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 31372259 - 31372299
Alignment:
Q  283 ctattgaccattttaatttggagtattggtacatacaaata 323  Q
    |||||| |||||||| |||| ||||||||||||||||||||    
T  31372259 ctattggccattttagtttgaagtattggtacatacaaata 31372299  T

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Target: scaffold0155 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 365 - 543
Target Start/End: Complemental strand, 966 - 774
Alignment:
Q  365 taatagaagatataaacacatgtatttttgtattcttgcatgtgtgtatccaagtga-----------ttgtaacacattttccttcattctcgtccaca 453  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||           ||||||||||||||||||||||||||||||||    
T  966 taatagaagaaataaacacatgtatttttgtattcttgcatgcgtgtatccaactgacgtcaaagtaattgtaacacattttccttcattctcgtccaca 867  T
Q  454 cccttcatgcaaaatatccatatactgttttctttttgtttatttccattccattgttggccgctcct---tatcttcaacactgtttcctat 543  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||    
T  866 cccttcatgcaaaatatccatatactgttttctttttgtttatttccattccattgatggccgctccttactatcttcaacactgtttcctat 774  T

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Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 427 - 543
Target Start/End: Complemental strand, 42390630 - 42390515
Alignment:
Q  427 acacattttccttcattctcgtccacacccttcatgcaaaatatccatatactgttttctttttgtttatttccattccattgttggccgctcct---ta 523  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||   ||    
T  42390630 acacattttccttcattctcgtccac--ccttcatgcaaaatatccata--ctgttttccttttgtttatttccattccattgttggccgctccttaata 42390535  T
Q  524 tcttcaacactgtttcctat 543  Q
    ||||||||||||||||||||    
T  42390534 tcttcaacactgtttcctat 42390515  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 53239173 - 53239133
Alignment:
Q  283 ctattgaccattttaatttggagtattggtacatacaaata 323  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  53239173 ctattgaccattttagtttggagtattggtacatacaaata 53239133  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 362 - 399
Target Start/End: Complemental strand, 42390705 - 42390668
Alignment:
Q  362 aattaatagaagatataaacacatgtatttttgtattc 399  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  42390705 aattaatagaaaatataaacacatgtatttttgtattc 42390668  T

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Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 195 - 323
Target Start/End: Complemental strand, 2170265 - 2170142
Alignment:
Q  195 aagtcccaaagtgcaaaactcacaagtttttagtggtactaattccatgattcagtcaaacttatttgttccatactgtcnnnnnnnnctattgaccatt 294  Q
    |||| |||||||||||||||||||||  ||| ||||| ||||||| || ||||||||||||||| ||||| ||| |||||        ||||||||||||    
T  2170265 aagttccaaagtgcaaaactcacaag--tttggtggtgctaattctataattcagtcaaacttacttgttgcatgctgtc---aaaaactattgaccatt 2170171  T
Q  295 ttaatttggagtattggtacatacaaata 323  Q
    ||| || ||||||||||||||||||||||    
T  2170170 ttagttaggagtattggtacatacaaata 2170142  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 323
Target Start/End: Complemental strand, 28851245 - 28851126
Alignment:
Q  200 ccaaagtgcaaaactcacaagtttttagtggtactaattccatgattcagtcaaacttatttgttccatactgtcnnnnnnnnctattgaccattttaat 299  Q
    ||||||||||||||||||||||||   ||||| ||||||| || || |||||||||||| ||||||||| |||||        |||||| |||||||| |    
T  28851245 ccaaagtgcaaaactcacaagtttg--gtggtgctaattctataatccagtcaaacttacttgttccatgctgtc--aaaaaactattggccattttagt 28851150  T
Q  300 ttggagtattggtacatacaaata 323  Q
     | |||||||||||||||||||||    
T  28851149 ctagagtattggtacatacaaata 28851126  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 195 - 323
Target Start/End: Original strand, 32248959 - 32249083
Alignment:
Q  195 aagtcccaaagtgcaaaactcacaagtttttagtggtactaattccatgattcagtcaaacttatttgttccatactgtcnnnnnnnnctattgaccatt 294  Q
    |||||||||||||||||| |||||||  ||| ||||| ||||||| || || |||||||||||| ||||||||| || ||        ||||||  ||||    
T  32248959 aagtcccaaagtgcaaaattcacaag--tttggtggtgctaattctataatccagtcaaacttacttgttccatgctatc--aaaaaactattggtcatt 32249054  T
Q  295 ttaatttggagtattggtacatacaaata 323  Q
    |||||||||||||||||||||||||||||    
T  32249055 ttaatttggagtattggtacatacaaata 32249083  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 199 - 323
Target Start/End: Complemental strand, 33426583 - 33426463
Alignment:
Q  199 cccaaagtgcaaaactcacaagtttttagtggtactaattccatgattcagtcaaacttatttgttccatactgtcnnnnnnnnctattgaccattttaa 298  Q
    ||||||||| |||||||||||||||   ||||| ||||||| || || || ||||||||| ||||||||| |||||        |||||||||||||||     
T  33426583 cccaaagtgtaaaactcacaagtttg--gtggtgctaattctataatccaatcaaacttacttgttccatgctgtcaaaaaa--ctattgaccattttag 33426488  T
Q  299 tttggagtattggtacatacaaata 323  Q
    |||||||||||| ||||||||||||    
T  33426487 tttggagtattgatacatacaaata 33426463  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 323
Target Start/End: Original strand, 47815556 - 47815650
Alignment:
Q  227 gtggtactaattccatgattcagtcaaacttatttgttccatactgtcnnnnnnnnctattgaccattttaatttggagtattggtacatacaaata 323  Q
    ||||| ||||||| || |||||||||||||||||||||||||  ||||        |||||| |||||||| |||||||||||| ||||||||||||    
T  47815556 gtggtgctaattctataattcagtcaaacttatttgttccatgttgtc--aaaaaactattggccattttagtttggagtattgttacatacaaata 47815650  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 323
Target Start/End: Complemental strand, 10460966 - 10460846
Alignment:
Q  199 cccaaagtgcaaaactcacaagtttttagtggtactaattccatgattcagtcaaacttatttgttccatactgtcnnnnnnnnctattgaccattttaa 298  Q
    |||||||||||||| ||||||||||   ||||| ||||||| || || |||||||||||| ||||||||| |||||        |||||| ||||||||     
T  10460966 cccaaagtgcaaaattcacaagtttg--gtggtgctaattctataatccagtcaaacttacttgttccatgctgtc--aaaaaactattggccattttag 10460871  T
Q  299 tttggagtattggtacatacaaata 323  Q
    |||||| ||||| ||||||||||||    
T  10460870 tttggaatattgatacatacaaata 10460846  T

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