View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11577_high_34 (Length: 261)
Name: NF11577_high_34
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11577_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 4392287 - 4392517
Alignment:
| Q |
21 |
aataacacacaactcactactctttctttttctctttcccttcccccatggaaatgtgttaaaagaaagagacaaattgttcagatcacaaacactccac |
120 |
Q |
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| T |
4392287 |
aataacacacaactcactactctttctttttctctttcccttcccccatggaaatgtgttaaaagaaagagacaaattgttcagatcacacacactccac |
4392386 |
T |
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| Q |
121 |
accnnnnnnnnnnnctttctttctaagtgatgaaagccctagcattaacaccnnnnnnnnctctgccatctctgcaccaacaagattcctaattaagtcc |
220 |
Q |
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| T |
4392387 |
acctttttt------tttctttctaagtgatgaaagccctagcattaacaccttttttttctctgccatctctgcaccaacaagattcctaattaagtcc |
4392480 |
T |
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| Q |
221 |
ccagcatgtattcttttccttgttccctttgcttctc |
257 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
4392481 |
ccagcatgtattcttttccttgttccctttgcttctc |
4392517 |
T |
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