View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11577_high_38 (Length: 250)

Name: NF11577_high_38
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11577_high_38
NF11577_high_38
[»] chr2 (33 HSPs)
chr2 (9-250)||(43808496-43808737)
chr2 (156-245)||(33267572-33267661)
chr2 (170-245)||(18962108-18962183)
chr2 (170-250)||(11307232-11307312)
chr2 (170-245)||(9478224-9478299)
chr2 (170-245)||(17952771-17952846)
chr2 (170-240)||(28902007-28902077)
chr2 (173-245)||(3102618-3102690)
chr2 (157-245)||(14209202-14209290)
chr2 (60-125)||(43456649-43456714)
chr2 (166-216)||(3458610-3458661)
chr2 (170-245)||(29430681-29430755)
chr2 (66-125)||(29430821-29430880)
chr2 (80-122)||(1625967-1626009)
chr2 (185-242)||(5998787-5998844)
chr2 (172-245)||(37053519-37053592)
chr2 (204-242)||(42826314-42826352)
chr2 (170-203)||(1160814-1160847)
chr2 (173-245)||(3423841-3423913)
chr2 (91-128)||(18525210-18525247)
chr2 (157-202)||(19243577-19243622)
chr2 (165-245)||(34339048-34339128)
chr2 (170-231)||(40722547-40722606)
chr2 (212-245)||(44458450-44458483)
chr2 (68-125)||(44606060-44606117)
chr2 (85-125)||(1741999-1742039)
chr2 (172-243)||(3673734-3673805)
chr2 (170-214)||(5043630-5043674)
chr2 (191-238)||(5045248-5045295)
chr2 (215-243)||(13864577-13864605)
chr2 (170-202)||(31740029-31740061)
chr2 (170-202)||(37292417-37292449)
chr2 (214-250)||(44606202-44606238)
[»] chr5 (27 HSPs)
chr5 (170-242)||(35135732-35135804)
chr5 (170-245)||(32059659-32059733)
chr5 (156-240)||(32197657-32197741)
chr5 (156-245)||(11684348-11684435)
chr5 (177-245)||(29014681-29014749)
chr5 (170-245)||(36539671-36539746)
chr5 (172-243)||(37063146-37063217)
chr5 (172-239)||(41277422-41277490)
chr5 (60-111)||(7550460-7550511)
chr5 (85-120)||(8090004-8090039)
chr5 (71-125)||(11297149-11297203)
chr5 (68-118)||(12407680-12407730)
chr5 (179-245)||(29365544-29365609)
chr5 (77-127)||(37611174-37611224)
chr5 (77-127)||(37787904-37787954)
chr5 (204-245)||(4991048-4991088)
chr5 (173-245)||(6733966-6734037)
chr5 (176-244)||(7096203-7096271)
chr5 (173-245)||(20982208-20982280)
chr5 (54-127)||(40534260-40534333)
chr5 (67-127)||(4619768-4619828)
chr5 (170-202)||(8158371-8158403)
chr5 (187-239)||(8571302-8571353)
chr5 (85-125)||(10152397-10152437)
chr5 (95-127)||(11406255-11406287)
chr5 (80-124)||(12242672-12242716)
chr5 (85-125)||(14980572-14980612)
[»] chr1 (25 HSPs)
chr1 (172-245)||(45107548-45107620)
chr1 (170-234)||(48830146-48830210)
chr1 (66-121)||(4033965-4034020)
chr1 (172-237)||(1232964-1233029)
chr1 (70-123)||(16980868-16980921)
chr1 (172-232)||(30815707-30815767)
chr1 (181-237)||(1730825-1730881)
chr1 (179-250)||(48282053-48282125)
chr1 (78-125)||(49692012-49692059)
chr1 (169-250)||(870965-871046)
chr1 (191-245)||(3244829-3244883)
chr1 (68-126)||(4757400-4757458)
chr1 (80-122)||(6557039-6557081)
chr1 (180-245)||(33339500-33339565)
chr1 (68-125)||(38867783-38867838)
chr1 (88-125)||(6262801-6262838)
chr1 (72-109)||(7707269-7707306)
chr1 (170-245)||(28467377-28467454)
chr1 (85-126)||(28467495-28467536)
chr1 (68-125)||(34536221-34536278)
chr1 (170-250)||(52286598-52286678)
chr1 (170-245)||(4200154-4200229)
chr1 (207-239)||(7357455-7357487)
chr1 (170-202)||(9656618-9656650)
chr1 (170-237)||(15360827-15360894)
[»] scaffold0590 (1 HSPs)
scaffold0590 (171-245)||(1145-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (171-245)||(2756-2830)
[»] chr8 (23 HSPs)
chr8 (67-125)||(21130675-21130733)
chr8 (174-238)||(4558730-4558794)
chr8 (172-245)||(10722556-10722629)
chr8 (156-231)||(26215435-26215510)
chr8 (170-245)||(28769409-28769484)
chr8 (170-250)||(34788497-34788577)
chr8 (187-238)||(2595084-2595134)
chr8 (172-250)||(2699226-2699304)
chr8 (170-224)||(42237492-42237547)
chr8 (71-125)||(9700064-9700118)
chr8 (71-125)||(14949929-14949983)
chr8 (171-245)||(26717182-26717254)
chr8 (87-120)||(27412851-27412884)
chr8 (168-243)||(29262942-29263016)
chr8 (78-127)||(30191101-30191150)
chr8 (170-245)||(3645886-3645961)
chr8 (213-245)||(6918956-6918988)
chr8 (54-110)||(10923674-10923730)
chr8 (170-245)||(11056737-11056812)
chr8 (66-126)||(11376765-11376825)
chr8 (213-245)||(11952478-11952510)
chr8 (70-122)||(31915245-31915297)
chr8 (166-245)||(40357824-40357903)
[»] chr6 (24 HSPs)
chr6 (155-237)||(2034494-2034575)
chr6 (169-243)||(32513752-32513825)
chr6 (170-245)||(7351678-7351753)
chr6 (170-245)||(10452430-10452505)
chr6 (78-125)||(1669758-1669805)
chr6 (80-127)||(20368142-20368189)
chr6 (71-125)||(2460104-2460158)
chr6 (172-245)||(3217262-3217335)
chr6 (170-202)||(1402964-1402996)
chr6 (170-245)||(10032496-10032571)
chr6 (71-127)||(27693392-27693448)
chr6 (66-125)||(32577934-32577993)
chr6 (204-242)||(30817671-30817709)
chr6 (71-125)||(30863309-30863363)
chr6 (70-124)||(30865547-30865601)
chr6 (188-245)||(24332868-24332924)
chr6 (168-243)||(27693507-27693581)
chr6 (66-123)||(27857423-27857480)
chr6 (72-125)||(32917260-32917313)
chr6 (185-241)||(33911366-33911422)
chr6 (173-216)||(2027479-2027523)
chr6 (177-245)||(8010282-8010349)
chr6 (173-216)||(28660833-28660877)
chr6 (71-115)||(31668430-31668474)
[»] chr7 (20 HSPs)
chr7 (170-245)||(49060465-49060540)
chr7 (170-250)||(40428474-40428555)
chr7 (66-125)||(3500913-3500974)
chr7 (60-126)||(22387838-22387904)
chr7 (89-123)||(31149705-31149739)
chr7 (89-123)||(31167997-31168031)
chr7 (172-245)||(45593791-45593864)
chr7 (170-245)||(36370595-36370669)
chr7 (66-110)||(44151424-44151468)
chr7 (197-245)||(45078218-45078265)
chr7 (175-245)||(47004012-47004082)
chr7 (215-245)||(27389308-27389338)
chr7 (80-125)||(44808221-44808266)
chr7 (78-126)||(8094368-8094416)
chr7 (170-245)||(22759111-22759186)
chr7 (170-245)||(26935620-26935695)
chr7 (170-241)||(27481364-27481435)
chr7 (71-127)||(36537969-36538025)
chr7 (170-245)||(39551618-39551693)
chr7 (170-202)||(40689056-40689088)
[»] chr3 (27 HSPs)
chr3 (78-126)||(2175809-2175857)
chr3 (172-247)||(25459696-25459770)
chr3 (176-245)||(16790432-16790501)
chr3 (78-123)||(25182947-25182992)
chr3 (170-245)||(25183058-25183134)
chr3 (174-245)||(38462206-38462277)
chr3 (213-245)||(49772781-49772813)
chr3 (78-125)||(1810040-1810087)
chr3 (170-245)||(32703063-32703138)
chr3 (85-124)||(40880915-40880954)
chr3 (68-115)||(47584523-47584570)
chr3 (71-126)||(50015948-50016003)
chr3 (85-127)||(21574551-21574593)
chr3 (172-245)||(22232751-22232824)
chr3 (81-119)||(47132063-47132101)
chr3 (54-127)||(50004713-50004787)
chr3 (170-230)||(1395611-1395671)
chr3 (78-123)||(14548681-14548726)
chr3 (170-250)||(28779276-28779356)
chr3 (71-127)||(2304224-2304280)
chr3 (214-250)||(28842971-28843007)
chr3 (173-240)||(33965564-33965632)
chr3 (170-225)||(37689454-37689509)
chr3 (170-245)||(41028921-41028996)
chr3 (166-229)||(42809242-42809305)
chr3 (170-245)||(43116498-43116573)
chr3 (78-118)||(50211805-50211845)
[»] chr4 (29 HSPs)
chr4 (178-245)||(28581988-28582054)
chr4 (66-120)||(18628501-18628555)
chr4 (71-125)||(27123305-27123359)
chr4 (68-125)||(2996636-2996693)
chr4 (172-231)||(437504-437564)
chr4 (167-250)||(22684583-22684666)
chr4 (86-125)||(27725277-27725316)
chr4 (68-123)||(33534119-33534174)
chr4 (173-239)||(42321952-42322018)
chr4 (170-245)||(44319875-44319949)
chr4 (170-245)||(54325107-54325182)
chr4 (170-245)||(55437356-55437429)
chr4 (172-245)||(24193510-24193583)
chr4 (191-245)||(32920491-32920543)
chr4 (178-243)||(47970245-47970310)
chr4 (172-250)||(54414869-54414950)
chr4 (78-127)||(1554968-1555017)
chr4 (170-242)||(4071811-4071882)
chr4 (173-202)||(5219573-5219602)
chr4 (172-245)||(23819015-23819087)
chr4 (173-245)||(36734818-36734890)
chr4 (170-250)||(49219059-49219139)
chr4 (87-120)||(52428733-52428766)
chr4 (191-244)||(54986348-54986400)
chr4 (176-212)||(12162911-12162947)
chr4 (170-245)||(21157693-21157768)
chr4 (171-243)||(32724046-32724118)
chr4 (215-247)||(52645623-52645655)
chr4 (78-134)||(56007734-56007789)
[»] scaffold0153 (2 HSPs)
scaffold0153 (170-202)||(6568-6600)
scaffold0153 (170-202)||(13588-13620)
[»] scaffold0024 (1 HSPs)
scaffold0024 (156-231)||(21334-21409)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 43808737 - 43808496
Alignment:
Q  9 agcataggagacttaaagtgaacttataatgagaacatgtttagattgactttattcactgacataaatacttgtaagactatttgagagagcttatgaa 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808737 agcaaaggagacttaaagtgaacttataatgagaacatgtttagattgactttattcactgacataaatacttgtaagactatttgagagagcttatgaa 43808638  T
Q  109 aataacttatgacatgttcgattgtccataagttattttcagcttattagcttatagaaacagcttatatgaaaatagtttaactttattttatgtttgt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808637 aataacttatgacatgttcgattgtccataagttattttcagcttattagcttatagaaacagcttatatgaaaatagtttaactttattttatgtttgt 43808538  T
Q  209 tataaaaaatagcttatacataaacacttatatgatacgcgc 250  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43808537 tataaaaaatagcttatacataaacacttatatgatacgcgc 43808496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 33267572 - 33267661
Alignment:
Q  156 tagcttatagaaacagcttatatgaaaatagtttaactttatttta-tgtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||| | |||||| |||||||||| |||||||||||||    
T  33267572 tagcttataaaaacagcttatatgaaaacagtttaactttattttactgtttgttat-agaaatagattatacataagcacttatatgata 33267661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 18962108 - 18962183
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||| ||||||||||||||||||  |||||||| |||||||||| |||||||| |||||| ||||||    
T  18962108 agcttatatgaaaacagtttaactttattttatcttttgttat-aaaaatagctaatacataagcacttacatgata 18962183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 11307312 - 11307232
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgtttgtt-ataaaaaatagcttatacataaacacttatatgatacgcgc 250  Q
    ||||| |||||||||||||| |||||| ||||| |||||| | |||||||||||||||||| ||||||| ||||||| ||||    
T  11307312 agcttttatgaaaatagtttgactttactttatctttgttaaaaaaaaatagcttatacat-aacacttttatgataagcgc 11307232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 9478299 - 9478224
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgtt-tgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||||| ||| | |||||||||| |  ||||||| ||| ||||||||||||||||||||||||||||    
T  9478299 agcttatatgaaaatattttgagtttattttatctactgttatagaaa-tagcttatacataaacacttatatgata 9478224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 17952771 - 17952846
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||||||||| ||||||||||||  |||||||| | |||||||||||| |||| | |||||||||||    
T  17952771 agcttatatgaaaatagtttgactttattttatcttttgttat-agaaatagcttatatataagctcttatatgata 17952846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 28902077 - 28902007
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgtt-tgttataaaaaatagcttatacataaacacttata 240  Q
    |||||||||||||| ||||||| |||||||||  || ||||||||||| |||||||||||||| ||||||||    
T  28902077 agcttatatgaaaacagtttaattttattttaacttatgttataaaaa-tagcttatacataagcacttata 28902007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 3102690 - 3102618
Alignment:
Q  173 ttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||| |||||||||| |||||||||||| ||| | |||||||| |||||||||||||| || ||||||||||    
T  3102690 ttatataaaaatagtttgactttattttatattttgctataaaaa-tagcttatacataagcagttatatgata 3102618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 14209290 - 14209202
Alignment:
Q  157 agcttatagaaacagcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    ||||||| |||| |||||||||||||| ||||| | ||||||||||  ||||||||   |||||||||| ||| ||||||||||||||||    
T  14209290 agcttatggaaatagcttatatgaaaacagtttgaatttattttatcttttgttat-tgaaatagcttagacagaaacacttatatgata 14209202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 43456649 - 43456714
Alignment:
Q  60 ttattcactgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    ||||| ||| ||||||| |||||||||||| ||||| ||||||| |||||| |||| |||||||||    
T  43456649 ttatttactcacataaacacttgtaagactgtttgaaagagcttgtgaaaacaactcatgacatgt 43456714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 3458661 - 3458610
Alignment:
Q  166 aaacagcttatatgaaaatagtttaactttattttat-gtttgttataaaaa 216  Q
    |||||||||||||||||| ||||| ||||||||||||  |||||||||||||    
T  3458661 aaacagcttatatgaaaaaagtttgactttattttatcttttgttataaaaa 3458610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 29430755 - 29430681
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||| ||||| ||||| ||||||||| |  ||||||||| ||| |||||||||||||||| ||| |||||||    
T  29430755 agcttataagaaaacagtttgactttatttaacttttgttatagaaa-tagcttatacataaacccttgtatgata 29430681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 29430880 - 29430821
Alignment:
Q  66 actgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    ||||||||||| ||||||  |||||||||  ||| |||||||||||| ||||||||||||    
T  29430880 actgacataaacacttgtgggactatttggaagaacttatgaaaatagcttatgacatgt 29430821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 1626009 - 1625967
Alignment:
Q  80 ttgtaagactatttgagagagcttatgaaaataacttatgaca 122  Q
    |||||||||||||||||||| ||||||||| || |||||||||    
T  1626009 ttgtaagactatttgagagaacttatgaaagtagcttatgaca 1625967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 5998787 - 5998844
Alignment:
Q  185 agtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatg 242  Q
    |||||||||||||||||| ||| ||||||||| |||||||||| ||||||| |||||||    
T  5998787 agtttaactttattttatcttttgttataaaa-atagcttatatataaacaattatatg 5998844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 37053592 - 37053519
Alignment:
Q  172 cttatatgaaaatagtttaactttattttatgtt-tgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||| ||||| |||||||||||| || |||||| | ||||||  ||||||||| |||||||||||||    
T  37053592 cttatatgaaaacagtttgactttattttattttctgttat-agaaatagtctatacataagcacttatatgata 37053519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 42826352 - 42826314
Alignment:
Q  204 tttgttataaaaaatagcttatacataaacacttatatg 242  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  42826352 tttgttataaaaaatagcttatatataagcacttatatg 42826314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 1160814 - 1160847
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatg 203  Q
    |||||||||||||||||||| |||||||||||||    
T  1160814 agcttatatgaaaatagtttgactttattttatg 1160847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 3423841 - 3423913
Alignment:
Q  173 ttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    ||||||||||||| ||| ||||||||||||  |||| ||  ||||||| ||||||||||||||||| |||||||    
T  3423841 ttatatgaaaataatttgactttattttatcttttggta-caaaaataacttatacataaacacttgtatgata 3423913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 18525210 - 18525247
Alignment:
Q  91 tttgagagagcttatgaaaataacttatgacatgttcg 128  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  18525210 tttgagagagcttatgaaaatagcttatgacatattcg 18525247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 19243622 - 19243577
Alignment:
Q  157 agcttatagaaacagcttatatgaaaatagtttaactttattttat 202  Q
    |||||||||||||||||||||| |||| | ||||| ||||||||||    
T  19243622 agcttatagaaacagcttatatcaaaacaatttaaatttattttat 19243577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 34339128 - 34339048
Alignment:
Q  165 gaaacagcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 245  Q
    ||||||||||||| ||||| ||| | |||||||||||| ||| | |||| |||| || |||||||||| |||||||||||||    
T  34339128 gaaacagcttatacgaaaacagtctgactttattttatctttagctatagaaaa-agtttatacataagcacttatatgata 34339048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 40722547 - 40722606
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataa 231  Q
    |||||||||||||| ||||  |||||||||||| |||||||||||||| ||||||| |||||    
T  40722547 agcttatatgaaaacagttcgactttattttat-tttgttataaaaaa-agcttatgcataa 40722606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 44458450 - 44458483
Alignment:
Q  212 aaaaaatagcttatacataaacacttatatgata 245  Q
    ||||||||||||||||||||| ||||||||||||    
T  44458450 aaaaaatagcttatacataaatacttatatgata 44458483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 44606060 - 44606117
Alignment:
Q  68 tgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    |||||||| |||||||| |||| ||||  ||| |||||||||| ||||||||||||||    
T  44606060 tgacataagtacttgtacgactgtttggaagaacttatgaaaacaacttatgacatgt 44606117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 1741999 - 1742039
Alignment:
Q  85 agactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    |||||||||| ||||||||||| ||| ||||||||||||||    
T  1741999 agactatttgggagagcttatggaaacaacttatgacatgt 1742039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 3673805 - 3673734
Alignment:
Q  172 cttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatga 243  Q
    |||||||||||| | ||||||||||||||||  |||||||| | ||||| || |||||||| |||||||||||    
T  3673805 cttatatgaaaacaatttaactttattttatattttgttat-agaaataactaatacataagcacttatatga 3673734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 5043630 - 5043674
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgtttgttataaa 214  Q
    |||||||||||||| ||||| |||||||||||| ||| |||||||    
T  5043630 agcttatatgaaaacagtttgactttattttatctttcttataaa 5043674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 5045248 - 5045295
Alignment:
Q  191 actttattttatgttt-gttataaaaaatagcttatacataaacactta 238  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||||||||    
T  5045248 actttattttatcttttgttataaaa-atagcttatacataaacactta 5045295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 243
Target Start/End: Complemental strand, 13864605 - 13864577
Alignment:
Q  215 aaatagcttatacataaacacttatatga 243  Q
    |||||||||||||||||||||||||||||    
T  13864605 aaatagcttatacataaacacttatatga 13864577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 31740029 - 31740061
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat 202  Q
    |||||||||||||||||||| ||||||||||||    
T  31740029 agcttatatgaaaatagtttgactttattttat 31740061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 37292417 - 37292449
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat 202  Q
    |||||||||||||||||||| ||||||||||||    
T  37292417 agcttatatgaaaatagttttactttattttat 37292449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 44606202 - 44606238
Alignment:
Q  214 aaaatagcttatacataaacacttatatgatacgcgc 250  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  44606202 aaaatagcttatacataaacacttatataataagcgc 44606238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 35135732 - 35135804
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatg 242  Q
    |||||||||||||||||||| ||||||||||||  |||||||| | ||||| ||||||||||||||||||||||    
T  35135732 agcttatatgaaaatagtttgactttattttatcttttgttat-agaaatatcttatacataaacacttatatg 35135804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 32059659 - 32059733
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||| ||||| |||||||||||| || ||||  ||||| ||||||||||||| |||||||||||||    
T  32059659 agcttatatgaaaacagtttgactttattttatcttagtta-caaaaacagcttatacataagcacttatatgata 32059733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 240
Target Start/End: Complemental strand, 32197741 - 32197657
Alignment:
Q  156 tagcttatagaaacagcttatatgaaaatagtttaactttat-tttatgtttgttataaaaaatagcttatacataaacacttata 240  Q
    |||||||| ||||||||||||||||||||||||| ||||||| |  || ||||||| || |||||| |||||| ||||||||||||    
T  32197741 tagcttatggaaacagcttatatgaaaatagtttgactttatataaatttttgtta-aataaatagtttatacgtaaacacttata 32197657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 11684435 - 11684348
Alignment:
Q  156 tagcttatagaaacagcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    ||||||||  ||| |||||||||||||| ||||| ||| | || ||| ||||||||||||| |||||||||||| | |||||||||||||    
T  11684435 tagcttatgaaaatagcttatatgaaaacagtttcactattttatat-tttgttataaaaa-tagcttatacattagcacttatatgata 11684348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 29014749 - 29014681
Alignment:
Q  177 atgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    ||||||||||||| |||| ||||||| |||| | ||||||| |||||||||||| |||||||||||||||    
T  29014749 atgaaaatagtttgacttgattttatcgtttatcataaaaa-tagcttatacatgaacacttatatgata 29014681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 36539746 - 36539671
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgtttgttataaa-aaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||| || || |||||||||||| ||| | ||||| |||||||||| |||||| |||||||||||||    
T  36539746 agcttatatgaaaacaggttgactttattttatcttt-tgataaacaaatagcttacacataagcacttatatgata 36539671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 37063146 - 37063217
Alignment:
Q  172 cttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatga 243  Q
    |||||||||||||||||| ||||||||||||  |||||||| | |||||| |||||||||| || ||||||||    
T  37063146 cttatatgaaaatagtttgactttattttatcttttgttat-agaaatagtttatacataagcatttatatga 37063217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 41277422 - 41277490
Alignment:
Q  172 cttatatgaaaatagtttaactttattttatgtttg-ttataaaaaatagcttatacataaacacttat 239  Q
    |||||||||||| ||||| |||||||||||| |||| ||| |||||| ||||| ||||||| |||||||    
T  41277422 cttatatgaaaacagtttgactttattttatctttgattacaaaaaaaagcttttacataagcacttat 41277490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 7550460 - 7550511
Alignment:
Q  60 ttattcactgacataaatacttgtaagactatttgagagagcttatgaaaat 111  Q
    |||| ||||||||||| ||||||| ||||| |||||||||||||||| ||||    
T  7550460 ttatccactgacataattacttgtgagactctttgagagagcttatggaaat 7550511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 120
Target Start/End: Complemental strand, 8090039 - 8090004
Alignment:
Q  85 agactatttgagagagcttatgaaaataacttatga 120  Q
    |||||||||||||||||||||||||| |||||||||    
T  8090039 agactatttgagagagcttatgaaaacaacttatga 8090004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 11297149 - 11297203
Alignment:
Q  71 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    |||||| |||||||||||| ||||| |||||||||| ||| |||||| |||||||    
T  11297149 cataaacacttgtaagactgtttgaaagagcttatggaaacaacttaagacatgt 11297203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 12407680 - 12407730
Alignment:
Q  68 tgacataaatacttgtaagactatttgagagagcttatgaaaataacttat 118  Q
    ||||||||| |||||| ||||  ||||||||||||||||||||| ||||||    
T  12407680 tgacataaacacttgtgagacggtttgagagagcttatgaaaatgacttat 12407730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 29365609 - 29365544
Alignment:
Q  179 gaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||||| || |||| ||| | ||||||| |||||||||||| | |||||||||||||    
T  29365609 gaaaatagtttaacttgatgttatttttatcataaaaa-tagcttatacatgagcacttatatgata 29365544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 37611174 - 37611224
Alignment:
Q  77 tacttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 127  Q
    ||||||| ||| | |||||||||||||||||||| ||||| ||||||||||    
T  37611174 tacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttc 37611224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 37787904 - 37787954
Alignment:
Q  77 tacttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 127  Q
    ||||||| ||| | |||||||||||||||||||| ||||| ||||||||||    
T  37787904 tacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttc 37787954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 4991048 - 4991088
Alignment:
Q  204 tttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||| |||||||||||| ||||||||||||||||    
T  4991048 tttgttataaaa-atagcttatacacaaacacttatatgata 4991088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 6733966 - 6734037
Alignment:
Q  173 ttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 245  Q
    ||||||||||| | |||| ||||||||||| ||| |||||||||| ||| |||| |||||||||||||||||||    
T  6733966 ttatatgaaaacaattta-ctttattttatctttcgttataaaaa-tagattatgcataaacacttatatgata 6734037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 7096203 - 7096271
Alignment:
Q  176 tatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgat 244  Q
    ||||||||| |||| |||||||||||| ||| |||||| ||| |||||||||||||| ||||| ||||||    
T  7096203 tatgaaaatggtttgactttattttatcttttgttatagaaa-tagcttatacataagcacttgtatgat 7096271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 20982208 - 20982280
Alignment:
Q  173 ttatatgaaaatagtttaactttattttatg-tttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||  | || ||||||||||||  ||||||||| ||| |||||||||||||| |||||||||||||    
T  20982208 ttatatgaaaacgggttgactttattttatcctttgttatagaaa-tagcttatacataagcacttatatgata 20982280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 40534333 - 40534260
Alignment:
Q  54 ttgactttattcactgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 127  Q
    |||| |||||| ||||||||||| |||||| | ||| |||  ||||||||||| || || ||||||||||||||    
T  40534333 ttgagtttatttactgacataaacacttgtgatactgtttaggagagcttatggaagtagcttatgacatgttc 40534260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 4619828 - 4619768
Alignment:
Q  67 ctgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 127  Q
    |||||||||  ||||| || ||| |||| ||||||||||||||| |||| |||||||||||    
T  4619828 ctgacataagcacttgcaacactgtttgggagagcttatgaaaacaactaatgacatgttc 4619768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 8158371 - 8158403
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat 202  Q
    |||||||||||||||| ||||||||||||||||    
T  8158371 agcttatatgaaaataatttaactttattttat 8158403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 8571353 - 8571302
Alignment:
Q  187 tttaactttattttatgtttgttataaaaaatagcttatacataaacacttat 239  Q
    |||||||||||||| | ||||||||| |||||| | |||||||||||||||||    
T  8571353 tttaactttattttttctttgttata-aaaatatcatatacataaacacttat 8571302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 10152437 - 10152397
Alignment:
Q  85 agactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    |||||||||  ||||||||||||||| ||||||||||||||    
T  10152437 agactattttggagagcttatgaaaacaacttatgacatgt 10152397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 11406287 - 11406255
Alignment:
Q  95 agagagcttatgaaaataacttatgacatgttc 127  Q
    |||||||||||||||||||||||||| ||||||    
T  11406287 agagagcttatgaaaataacttatgatatgttc 11406255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 12242672 - 12242716
Alignment:
Q  80 ttgtaagactatttgagagagcttatgaaaataacttatgacatg 124  Q
    |||| ||| |||||||||||||||||| ||| |||||||||||||    
T  12242672 ttgtgagattatttgagagagcttatggaaaaaacttatgacatg 12242716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 14980612 - 14980572
Alignment:
Q  85 agactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    ||||| ||||||||||||||| ||||| |||||||||||||    
T  14980612 agactgtttgagagagcttataaaaatgacttatgacatgt 14980572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 45107620 - 45107548
Alignment:
Q  172 cttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||||||| |||||||||||| ||| |||| | |||||||||||| |||| |||||||||||||    
T  45107620 cttatatgaaaatagtttgactttattttatttttcttat-agaaatagcttatagataagcacttatatgata 45107548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 48830146 - 48830210
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaaca 234  Q
    |||||||||||||||||||| |||||||||||| |||| ||  | ||||| ||||||||||||||    
T  48830146 agcttatatgaaaatagtttgactttattttatctttggtaatagaaataacttatacataaaca 48830210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 4033965 - 4034020
Alignment:
Q  66 actgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgac 121  Q
    |||| |||||| |||||| ||| | |||||||||||||||||||||||||||||||    
T  4033965 actggcataaacacttgtgagattgtttgagagagcttatgaaaataacttatgac 4034020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 1232964 - 1233029
Alignment:
Q  172 cttatatgaaaatagtttaactttattttatg-tttgttataaaaaatagcttatacataaacactt 237  Q
    |||||| ||||||| ||||||||||||||||| |||||||| ||||| ||||||| |||||||||||    
T  1232964 cttatacgaaaataatttaactttattttatgttttgttat-aaaaacagcttatgcataaacactt 1233029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 16980921 - 16980868
Alignment:
Q  70 acataaatacttgtaagactatttgagagagcttatgaaaataacttatgacat 123  Q
    |||||| ||||||| |||||||||||||||||||||| ||| |||||| |||||    
T  16980921 acataagtacttgtgagactatttgagagagcttatggaaacaacttacgacat 16980868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 30815707 - 30815767
Alignment:
Q  172 cttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaa 232  Q
    |||||||||||||||||||||||||||||||  ||||||||| |||| |||||| |||||||    
T  30815707 cttatatgaaaatagtttaactttattttatcttttgttatagaaaa-agcttagacataaa 30815767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 1730881 - 1730825
Alignment:
Q  181 aaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacactt 237  Q
    ||||||||| |||||||||||| |||| |  |||||||||||||||||||| |||||    
T  1730881 aaatagtttgactttattttatctttggttaaaaaaatagcttatacataagcactt 1730825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 48282125 - 48282053
Alignment:
Q  179 gaaaatagtttaactttattttatgtttgttataaa-aaatagcttatacataaacacttatatgatacgcgc 250  Q
    ||||||||||| |||||||||||| ||| || || | ||||||||| ||||||| ||||||||||||| ||||    
T  48282125 gaaaatagtttgactttattttatctttcttttatagaaatagcttttacataagcacttatatgataagcgc 48282053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 49692012 - 49692059
Alignment:
Q  78 acttgtaagactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    |||||| ||||| ||||||||| |||||||||||| ||||||||||||    
T  49692012 acttgtgagactgtttgagagaacttatgaaaatagcttatgacatgt 49692059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 871046 - 870965
Alignment:
Q  169 cagcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgatacgcgc 250  Q
    ||||||||||||||| |  || |||| ||||||| ||| |||||||||| ||| |||||||||| ||||||||||||| ||||    
T  871046 cagcttatatgaaaaaaaattgacttaattttatcttttgttataaaaa-tagtttatacataagcacttatatgataagcgc 870965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 3244883 - 3244829
Alignment:
Q  191 actttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    ||||||||||||||||  || || ||||||||||||||||| |||||| ||||||    
T  3244883 actttattttatgttttgtacaagaaatagcttatacataagcacttacatgata 3244829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 4757458 - 4757400
Alignment:
Q  68 tgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgtt 126  Q
    ||||||||| |||||| |||| |||||  ||| |||||||||| |||||||||||||||    
T  4757458 tgacataaacacttgtgagaccatttggcagaacttatgaaaacaacttatgacatgtt 4757400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 6557081 - 6557039
Alignment:
Q  80 ttgtaagactatttgagagagcttatgaaaataacttatgaca 122  Q
    |||| ||||||||||||||| |||||||||||| |||||||||    
T  6557081 ttgtgagactatttgagagaacttatgaaaatagcttatgaca 6557039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 33339500 - 33339565
Alignment:
Q  180 aaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 245  Q
    ||||||||||||||| ||||||| ||| | |||| ||| |||||||||||||||||| |||||||||    
T  33339500 aaaatagtttaacttcattttatcttttggtatagaaa-tagcttatacataaacacctatatgata 33339565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 38867783 - 38867838
Alignment:
Q  68 tgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    ||||||||| ||||||  |||| |||||||||||||||| ||||||||||||| ||||    
T  38867783 tgacataaacacttgt--gactgtttgagagagcttatggaaataacttatgatatgt 38867838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 6262838 - 6262801
Alignment:
Q  88 ctatttgagagagcttatgaaaataacttatgacatgt 125  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  6262838 ctatttgggagagcttatgaaaataacttatgatatgt 6262801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 7707306 - 7707269
Alignment:
Q  72 ataaatacttgtaagactatttgagagagcttatgaaa 109  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  7707306 ataaatacttgtaagattatttgagagagtttatgaaa 7707269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 28467377 - 28467454
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat-gtttgttata-aaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||||| ||| ||||||||||||  ||||||||| | |||||| |||||||||| ||| | |||||||    
T  28467377 agcttatatgaaaataatttgactttattttatcttttgttatacacaaataggttatacataatcacctgtatgata 28467454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 28467536 - 28467495
Alignment:
Q  85 agactatttgagagagcttatgaaaataacttatgacatgtt 126  Q
    |||||||||| ||||| ||||| |||||||||||||||||||    
T  28467536 agactatttgggagagattatggaaataacttatgacatgtt 28467495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 34536278 - 34536221
Alignment:
Q  68 tgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    ||||||||| |||||| ||||| |||||||  ||||||||||| | ||||||||||||    
T  34536278 tgacataaacacttgtgagactgtttgagatggcttatgaaaacagcttatgacatgt 34536221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 52286678 - 52286598
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgatacgcgc 250  Q
    ||||||||||||||| |||||||||||||||||  |||||| | | ||||| ||||| ||||| | ||||||||||| ||||    
T  52286678 agcttatatgaaaattgtttaactttattttatcttttgttgt-agaaatatcttattcataagcgcttatatgataagcgc 52286598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 4200229 - 4200154
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||| |  || |||||||||||| ||| |||||||||| || |||||| ||||||||||| ||||||    
T  4200229 agcttatatgaaaacaacttgactttattttatcttttgttataaaaa-taacttatatataaacacttagatgata 4200154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 7357487 - 7357455
Alignment:
Q  207 gttataaaaaatagcttatacataaacacttat 239  Q
    ||||||||||||||||||||||||||| |||||    
T  7357487 gttataaaaaatagcttatacataaacgcttat 7357455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Complemental strand, 9656650 - 9656618
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat 202  Q
    |||||||||||||||| ||||||||||||||||    
T  9656650 agcttatatgaaaataatttaactttattttat 9656618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 15360894 - 15360827
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacactt 237  Q
    |||||||||||||| ||||| ||||||||||||  |||||||| | ||||| || ||||||||||||||    
T  15360894 agcttatatgaaaacagtttgactttattttatcttttgttat-agaaataactaatacataaacactt 15360827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 1145 - 1219
Alignment:
Q  171 gcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||| |||||||| |||||||||||| ||| |||||| ||| |||||||||||||| |||||||||||||    
T  1145 gcttatatgagaatagtttgactttattttatcttttgttatagaaa-tagcttatacataagcacttatatgata 1219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 2830 - 2756
Alignment:
Q  171 gcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||| |||||||| |||||||||||| ||| |||||| ||| |||||||||||||| |||||||||||||    
T  2830 gcttatatgagaatagtttgactttattttatcttttgttatagaaa-tagcttatacataagcacttatatgata 2756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 21130733 - 21130675
Alignment:
Q  67 ctgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    ||||||||||||||||| ||||| |||||||||||||||| ||||| ||| ||||||||    
T  21130733 ctgacataaatacttgtgagactgtttgagagagcttatggaaatagcttttgacatgt 21130675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 4558794 - 4558730
Alignment:
Q  174 tatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacactta 238  Q
    |||||||||||| ||||||||||||||||  ||| |||| | ||||||||||||||||||||||||    
T  4558794 tatatgaaaataatttaactttattttatcttttattat-agaaatagcttatacataaacactta 4558730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 10722629 - 10722556
Alignment:
Q  172 cttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||| ||| | |||||||||| ||||||||| |||  || ||||||| || |||||||||||||    
T  10722629 cttatatgaaaataattttagtttattttatctttgttatataaataagattatacacaagcacttatatgata 10722556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 26215510 - 26215435
Alignment:
Q  156 tagcttatagaaacagcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataa 231  Q
    ||||||||  |||||  ||||| ||||||||||||||||||||||||  |||||||| | |||||||||||||||||    
T  26215510 tagcttatgaaaacatattatacgaaaatagtttaactttattttatcttttgttat-agaaatagcttatacataa 26215435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 28769409 - 28769484
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||| ||||||||||| |||| ||||||| ||||||||||  || |||||||||||||| || ||||||||||    
T  28769409 agcttataagaaaatagtttgacttaattttatagtttgttataggaa-tagcttatacataagcatttatatgata 28769484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 34788497 - 34788577
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgatacgcgc 250  Q
    |||||||||| ||| ||||| |||||||||||| |||| |   ||||||||||||||| ||| || |||||||||| ||||    
T  34788497 agcttatatggaaacagtttgactttattttatctttggtcataaaaatagcttatacgtaagcatttatatgataagcgc 34788577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 2595084 - 2595134
Alignment:
Q  187 tttaactttattttatgtttgttataaaaaatagcttatacataaacactta 238  Q
    |||||||||||||||| || ||||||||||| | ||||||||||||||||||    
T  2595084 tttaactttattttatctt-gttataaaaaaaaccttatacataaacactta 2595134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 2699304 - 2699226
Alignment:
Q  172 cttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgatacgcgc 250  Q
    |||||||||||||||||||||||||||||||  |||||| | | ||||| |||||| ||| |||| ||||||||| ||||    
T  2699304 cttatatgaaaatagtttaactttattttatattttgttgt-agaaataacttatatatagacacgtatatgataggcgc 2699226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 42237492 - 42237547
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagctta 224  Q
    |||||||||||||| | ||||||||||||||||  |||||||||||||| ||||||    
T  42237492 agcttatatgaaaacaatttaactttattttatcttttgttataaaaaagagctta 42237547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 9700118 - 9700064
Alignment:
Q  71 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    |||||| |||||| ||||||||||||||||||| |||||  || |||||||||||    
T  9700118 cataaacacttgtgagactatttgagagagcttgtgaaatcaatttatgacatgt 9700064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 14949983 - 14949929
Alignment:
Q  71 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    |||||| | |||| ||||| |||  ||||||||||||||||||||||||||||||    
T  14949983 cataaacatttgtgagactgtttaggagagcttatgaaaataacttatgacatgt 14949929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 26717254 - 26717182
Alignment:
Q  171 gcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||| |||||||||||| ||||||||||||  ||||||| |||| |||||||| || || |||||||||||||    
T  26717254 gcttatttgaaaatagtttgactttattttat-cttgttat-aaaattagcttattcagaagcacttatatgata 26717182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 120
Target Start/End: Original strand, 27412851 - 27412884
Alignment:
Q  87 actatttgagagagcttatgaaaataacttatga 120  Q
    |||||||||||||||||||||||| |||||||||    
T  27412851 actatttgagagagcttatgaaaacaacttatga 27412884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 29262942 - 29263016
Alignment:
Q  168 acagcttatatgaaaatagtttaactttattttatgtt-tgttataaaaaatagcttatacataaacacttatatga 243  Q
    |||||||||||||||||| ||| |||||||||||| || | ||||| |||||| |  ||| ||||||||||||||||    
T  29262942 acagcttatatgaaaataatttgactttattttatcttctattatagaaaataac--atatataaacacttatatga 29263016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 30191101 - 30191150
Alignment:
Q  78 acttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 127  Q
    |||||| ||||| |||| ||||||||||| ||| ||||||||||||||||    
T  30191101 acttgttagactgtttgggagagcttatggaaacaacttatgacatgttc 30191150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 3645886 - 3645961
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgtttg-ttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||||||||| | ||| |||||| |||  ||||| ||| ||||||||||| || |||||||||||||    
T  3645886 agcttatatgaaaatagtttgattttgttttatattttcttatagaaa-tagcttatacacaagcacttatatgata 3645961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 6918988 - 6918956
Alignment:
Q  213 aaaaatagcttatacataaacacttatatgata 245  Q
    ||||||||||||||||||| |||||||||||||    
T  6918988 aaaaatagcttatacataagcacttatatgata 6918956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 10923730 - 10923674
Alignment:
Q  54 ttgactttattcactgacataaatacttgtaagactatttgagagagcttatgaaaa 110  Q
    |||| |||||| | || |||||| ||||||||||| ||||||||||| |||||||||    
T  10923730 ttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaa 10923674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 11056737 - 11056812
Alignment:
Q  170 agcttatatgaaaatagtttaacttta-ttttatgtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    ||||||||||||||||||| ||||||| ||||   |||||||| | |||||||| || ||| |||||||||||||||    
T  11056737 agcttatatgaaaatagttcaactttatttttccttttgttat-agaaatagctcatgcatgaacacttatatgata 11056812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 11376825 - 11376765
Alignment:
Q  66 actgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgtt 126  Q
    ||||| |||| | ||||| |||||||||| |||| |||||||||||| ||| |||||||||    
T  11376825 actgatataagttcttgtgagactatttgggagaacttatgaaaatagcttgtgacatgtt 11376765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 11952478 - 11952510
Alignment:
Q  213 aaaaatagcttatacataaacacttatatgata 245  Q
    |||||| ||||||||||||||||||||||||||    
T  11952478 aaaaatggcttatacataaacacttatatgata 11952510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 31915245 - 31915297
Alignment:
Q  70 acataaatacttgtaagactatttgagagagcttatgaaaataacttatgaca 122  Q
    |||||||||||||| ||||| ||||||| |||||||  ||| |||||||||||    
T  31915245 acataaatacttgtgagactgtttgagaaagcttatacaaacaacttatgaca 31915297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 40357903 - 40357824
Alignment:
Q  166 aaacagcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 245  Q
    ||||||| | |||||||||| ||| |||||||||||| ||| ||||||  ||  |||||||||||||| ||||||||||||    
T  40357903 aaacagcatttatgaaaataattttactttattttatcttttgttatatcaag-agcttatacataaatacttatatgata 40357824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 2034494 - 2034575
Alignment:
Q  155 ttagcttatagaaacagcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacactt 237  Q
    |||||||||  ||| ||||||||||||| |||||| |||||||||||| |||||| | ||||| ||||||||||||| |||||    
T  2034494 ttagcttatgaaaaaagcttatatgaaagtagtttgactttattttatctttgttgt-aaaaacagcttatacataagcactt 2034575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 32513825 - 32513752
Alignment:
Q  169 cagcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatga 243  Q
    ||||||||||| ||||||||| |||||||||||| |||||||| | ||||| ||||| |||||||||| ||||||    
T  32513825 cagcttatatggaaatagtttgactttattttatttttgttat-agaaataacttatgcataaacactaatatga 32513752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 7351678 - 7351753
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||| |||||||||||||||||| |||| |||| | |||||| |||||||||| || ||||||||||    
T  7351678 agcttatatgaaaacagtttaactttattttatagtttattat-ataaatagtttatacataagcatttatatgata 7351753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 10452430 - 10452505
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||||||||| | ||||||||||  |||||||| | ||||||||||||||||| |||| ||||||||    
T  10452430 agcttatatgaaaatagtttgattttattttatattttgttat-agaaatagcttatacataagcactgatatgata 10452505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 1669758 - 1669805
Alignment:
Q  78 acttgtaagactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||||||||    
T  1669758 acttgtaagactaattgggagagcttatgaaaacaacttatgacatgt 1669805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 20368142 - 20368189
Alignment:
Q  80 ttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 127  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||||    
T  20368142 ttgtaagactatttgggagaacttatgaaaacaacttatgacatgttc 20368189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 2460104 - 2460158
Alignment:
Q  71 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    ||||| ||||||| ||||| |||||||||||||||| ||| ||||||||||||||    
T  2460104 cataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgt 2460158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 3217262 - 3217335
Alignment:
Q  172 cttatatgaaaatagtttaactttattttatgtt-tgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||| ||| |||||||||||| || | |||  ||||||||||||||||||| |||||||||||||    
T  3217262 cttatatgaaaataatttgactttattttatcttctctta-caaaaatagcttatacataagcacttatatgata 3217335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 202
Target Start/End: Complemental strand, 1402996 - 1402964
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat 202  Q
    |||||||||||||||||||||||||||||||||    
T  1402996 agcttatatgaaaatagtttaactttattttat 1402964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 10032571 - 10032496
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgt-ttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    ||||||||||||| ||||||  |||||||| |  | |||||||||||| ||||||||||||||||| ||||||||||    
T  10032571 agcttatatgaaattagtttgcctttatttcacctattgttataaaaa-tagcttatacataaacatttatatgata 10032496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 27693392 - 27693448
Alignment:
Q  71 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 127  Q
    ||||| ||||||| |||||||||||||||  ||||| ||| ||||||||||||||||    
T  27693392 cataagtacttgtgagactatttgagagaatttatggaaacaacttatgacatgttc 27693448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 32577934 - 32577993
Alignment:
Q  66 actgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    |||| ||||||||||||  | | | |||||||||||||||||||| ||||||||||||||    
T  32577934 actggcataaatacttgggacattgtttgagagagcttatgaaaacaacttatgacatgt 32577993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 30817671 - 30817709
Alignment:
Q  204 tttgttataaaaaatagcttatacataaacacttatatg 242  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  30817671 tttgttataaaaaatagcatatacataagcacttatatg 30817709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 30863363 - 30863309
Alignment:
Q  71 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    |||||| |||||| ||||| ||||  |||||||||||||| ||||||||||||||    
T  30863363 cataaacacttgttagactctttggtagagcttatgaaaacaacttatgacatgt 30863309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 30865601 - 30865547
Alignment:
Q  70 acataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatg 124  Q
    ||||||| |||||| ||||  ||| |||||||||||| |||||||||||||||||    
T  30865601 acataaacacttgttagacagtttaagagagcttatggaaataacttatgacatg 30865547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 24332924 - 24332868
Alignment:
Q  188 ttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    ||||||||||||||| ||| ||| || ||||||||||||||||| |||||||| ||||    
T  24332924 ttaactttattttatctttttta-aagaaatagcttatacataatcacttataggata 24332868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 27693507 - 27693581
Alignment:
Q  168 acagcttatatgaaaatagtttaactttattttatgtt-tgttataaaaaatagcttatacataaacacttatatga 243  Q
    |||||||||||||||||| ||| |||||||||||| || | ||||| |||||| |  ||| ||||||||||||||||    
T  27693507 acagcttatatgaaaataatttgactttattttatcttctattatagaaaataac--atatataaacacttatatga 27693581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 27857480 - 27857423
Alignment:
Q  66 actgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacat 123  Q
    ||||||||| | |||||| | ||| |||| ||||||||||||||| ||||||||||||    
T  27857480 actgacatagacacttgtgaaactgtttgggagagcttatgaaaacaacttatgacat 27857423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 32917313 - 32917260
Alignment:
Q  72 ataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    ||||| |||||| ||||| |||| ||||||||||| ||| ||||||||||||||    
T  32917313 ataaacacttgtgagactgtttgggagagcttatggaaacaacttatgacatgt 32917260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 33911366 - 33911422
Alignment:
Q  185 agtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatat 241  Q
    ||||||||||||||| || ||| |||||||||| ||| ||||||||||||||||||||    
T  33911366 agtttaactttatttgatcttttgttataaaaa-tagattatacataaacacttatat 33911422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 2027479 - 2027523
Alignment:
Q  173 ttatatgaaaatagtttaactttattttat-gtttgttataaaaa 216  Q
    ||||||||||||||||| ||||||||||||  |||||||||||||    
T  2027479 ttatatgaaaatagtttgactttattttatcttttgttataaaaa 2027523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 8010349 - 8010282
Alignment:
Q  177 atgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||| ||| || ||||||||||||  |||||||| ||| |||||||||| ||| |||||||||||||    
T  8010349 atgaaagtagattgactttattttattgttgttatagaaa-tagcttatacctaagcacttatatgata 8010282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 28660833 - 28660877
Alignment:
Q  173 ttatatgaaaatagtttaactttattttatgt-ttgttataaaaa 216  Q
    ||||||||||||| |||||||||||||||| | ||||||||||||    
T  28660833 ttatatgaaaataatttaactttattttatctattgttataaaaa 28660877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 31668474 - 31668430
Alignment:
Q  71 cataaatacttgtaagactatttgagagagcttatgaaaataact 115  Q
    |||||| |||||| |||||||| ||||||||||||||||| ||||    
T  31668474 cataaacacttgtgagactattagagagagcttatgaaaacaact 31668430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 49060540 - 49060465
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 245  Q
    ||||||||| |||||| ||| |||||||||||| ||| |||||| ||| ||||||||||||||| ||||||||||||    
T  49060540 agcttatataaaaataatttgactttattttattttttgttatagaaa-tagcttatacataaatacttatatgata 49060465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 40428555 - 40428474
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgttt--gttataaaaaatagcttatacataaacacttatatgatacgcgc 250  Q
    |||||||||||||||| |||||||||||||||| |||  |||||| ||||| |||||| ||||| ||||||||| ||| ||||    
T  40428555 agcttatatgaaaataatttaactttattttattttttcgttatagaaaat-gcttatccataatcacttatataataggcgc 40428474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 3500913 - 3500974
Alignment:
Q  66 actgacataaatacttg--taagactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    ||||||||||| |||||  |||| ||||||| ||||||||||| ||||||||||||||||||    
T  3500913 actgacataaaaacttgcgtaagtctatttgtgagagcttatggaaataacttatgacatgt 3500974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 22387838 - 22387904
Alignment:
Q  60 ttattcactgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgtt 126  Q
    ||||| ||||||||||| || ||| ||||| |||| ||||||||||||||| |||||||| ||||||    
T  22387838 ttatttactgacataaacacgtgtgagactgtttgggagagcttatgaaaacaacttatggcatgtt 22387904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 31149739 - 31149705
Alignment:
Q  89 tatttgagagagcttatgaaaataacttatgacat 123  Q
    |||||||||||||||||||||||||||||||||||    
T  31149739 tatttgagagagcttatgaaaataacttatgacat 31149705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 31168031 - 31167997
Alignment:
Q  89 tatttgagagagcttatgaaaataacttatgacat 123  Q
    |||||||||||||||||||||||||||||||||||    
T  31168031 tatttgagagagcttatgaaaataacttatgacat 31167997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 45593791 - 45593864
Alignment:
Q  172 cttatatgaaaatagtttaactttattttatg-tttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||| ||||| ||||||||||||| |||||||  | ||||||||||||||||| || ||||||||||    
T  45593791 cttatatgaaaacagtttgactttattttatgttttgtta-cagaaatagcttatacataagcatttatatgata 45593864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 36370669 - 36370595
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacat-aaacacttatatgata 245  Q
    ||||||| |||||| |||||||||| ||||||| || |||||| |||||||||||||||| |||||| |||||||||    
T  36370669 agcttatgtgaaaacagtttaactt-attttatctt-gttatagaaaatagcttatacataaaacacatatatgata 36370595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 44151424 - 44151468
Alignment:
Q  66 actgacataaatacttgtaagactatttgagagagcttatgaaaa 110  Q
    |||||||||| ||||||| ||| ||||||||||||||||||||||    
T  44151424 actgacataagtacttgtgagattatttgagagagcttatgaaaa 44151468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 45078265 - 45078218
Alignment:
Q  197 ttttatgtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||    
T  45078265 ttttatttttgttataaaaa-tagcttatacataagcacttatatgata 45078218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 47004082 - 47004012
Alignment:
Q  175 atatgaaaatagtttaactttattttatgt-ttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||| |||||||||| |||||||||||| | |||||||| ||| ||||||| | ||||||||||||||||||    
T  47004082 atataaaaatagtttgactttattttatctattgttatagaaa-tagcttacatataaacacttatatgata 47004012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 245
Target Start/End: Complemental strand, 27389338 - 27389308
Alignment:
Q  215 aaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||||||||||||||||||||    
T  27389338 aaatagcttatacataaacacttatatgata 27389308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 44808266 - 44808221
Alignment:
Q  80 ttgtaagactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    |||| ||||| ||||| ||| |||||||||||||||||||||||||    
T  44808266 ttgtcagactgtttgatagaccttatgaaaataacttatgacatgt 44808221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 8094416 - 8094368
Alignment:
Q  78 acttgtaagactatttgagagagcttatgaaaataacttatgacatgtt 126  Q
    |||||| |||||||||||||||  ||||||||| | |||||||||||||    
T  8094416 acttgtgagactatttgagagattttatgaaaacagcttatgacatgtt 8094368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 22759186 - 22759111
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||| | |||  ||||||||||| ||| |||||| ||| ||||||| |||||||| |||||||||||    
T  22759186 agcttatatgaaaacaattttcctttattttatcttttgttatacaaa-tagcttaaacataaacgcttatatgata 22759111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 26935620 - 26935695
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatg-tttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||| ||||||||| | |||||| |||||||||  |||||||||||| |||||||| ||| || |||||||||||||    
T  26935620 agctcatatgaaaacaatttaaccttattttatcatttgttataaaa-atagcttacacaaaagcacttatatgata 26935695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 241
Target Start/End: Original strand, 27481364 - 27481435
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatg-tttgttataaaaaatagcttatacataaacacttatat 241  Q
    |||||||||| ||| ||||| ||||  ||||||  ||||||||| ||| ||||||||||||||||||||||||    
T  27481364 agcttatatggaaacagtttgacttcgttttatcctttgttatagaaa-tagcttatacataaacacttatat 27481435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 36538025 - 36537969
Alignment:
Q  71 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 127  Q
    |||||| |||||| ||| | ||||||||| |||||| ||| ||||||||||||||||    
T  36538025 cataaacacttgtgagattgtttgagagaacttatggaaacaacttatgacatgttc 36537969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 39551618 - 39551693
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||| ||||| |||||| | ||| ||| |||||| ||| |||||||||| |||| ||||||||||||    
T  39551618 agcttatatgaaaacagttttactttagtatatcttttgttatagaaa-tagcttatacttaaatacttatatgata 39551693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 40689056 - 40689088
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat 202  Q
    |||||||||||||||| ||||||||||||||||    
T  40689056 agcttatatgaaaataatttaactttattttat 40689088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 2175809 - 2175857
Alignment:
Q  78 acttgtaagactatttgagagagcttatgaaaataacttatgacatgtt 126  Q
    |||||||||||||||||||| || ||||||||| |||||||||||||||    
T  2175809 acttgtaagactatttgagatagtttatgaaaacaacttatgacatgtt 2175857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 25459696 - 25459770
Alignment:
Q  172 cttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgatacg 247  Q
    ||||||||||||||||||| |||||| |||| |||||||| || ||||| ||||||| || |||||| ||||||||    
T  25459696 cttatatgaaaatagtttatctttatattatctttgttat-aacaatagtttatacaaaagcacttacatgatacg 25459770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 16790432 - 16790501
Alignment:
Q  176 tatgaaaatagtttaactttattttatgt-ttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||| ||| | |||||||||| | ||||||||||| ||||||||||||||| |||||||||||||    
T  16790432 tatgaaaataatttgattttattttatctgttgttataaaa-atagcttatacataagcacttatatgata 16790501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 25182947 - 25182992
Alignment:
Q  78 acttgtaagactatttgagagagcttatgaaaataacttatgacat 123  Q
    |||||| ||||| |||||||||||||||||||| ||||||||||||    
T  25182947 acttgtgagactgtttgagagagcttatgaaaacaacttatgacat 25182992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 25183058 - 25183134
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttataca-taaacacttatatgata 245  Q
    |||| |||||||||||| |||||||||||| ||  |||||||| |||||||| ||||||| |||||||||||||||||    
T  25183058 agctcatatgaaaatagcttaactttatttaatcttttgttat-aaaaatagtttatacattaaacacttatatgata 25183134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 38462277 - 38462206
Alignment:
Q  174 tatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||| ||||| |||||||||||| ||| | |||| ||| ||||||||| ||||||||||||||||||    
T  38462277 tatatgaaaacagtttgactttattttatcttttggtatagaaa-tagcttataaataaacacttatatgata 38462206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 49772781 - 49772813
Alignment:
Q  213 aaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||||||||||||||||||||||    
T  49772781 aaaaatagcttatacataaacacttatatgata 49772813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 1810087 - 1810040
Alignment:
Q  78 acttgtaagactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    |||||| |||||||||||||||||||| | ||| ||||||||||||||    
T  1810087 acttgtgagactatttgagagagcttacggaaacaacttatgacatgt 1810040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 32703138 - 32703063
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||| | ||| | |||||||||| |||  ||  | |||||||||||||||||||| ||||||||||    
T  32703138 agcttatatgaaaacaatttgagtttattttatcttttataatagaaatagcttatacataaacatttatatgata 32703063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 40880915 - 40880954
Alignment:
Q  85 agactatttgagagagcttatgaaaataacttatgacatg 124  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  40880915 agactgtttgagagagcttatgaaaacaacttatgacatg 40880954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 47584570 - 47584523
Alignment:
Q  68 tgacataaatacttgtaagactatttgagagagcttatgaaaataact 115  Q
    ||||||||  |||||| |||||||||||||||||||||||||| ||||    
T  47584570 tgacataagcacttgtgagactatttgagagagcttatgaaaagaact 47584523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 50016003 - 50015948
Alignment:
Q  71 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgtt 126  Q
    |||||| |||||| ||||| ||||||||| |||||||||| ||| |||||||||||    
T  50016003 cataaacacttgtgagactgtttgagagaacttatgaaaagaacgtatgacatgtt 50015948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 21574593 - 21574551
Alignment:
Q  85 agactatttgagagagcttatgaaaataacttatgacatgttc 127  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||    
T  21574593 agactgtttgggagagcttatgaaaacaacttatgacatgttc 21574551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 22232824 - 22232751
Alignment:
Q  172 cttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||| ||||| ||||||||||||  |||||||| | ||||||||||||||| | || ||||||||||    
T  22232824 cttatatgaaaacagtttgactttattttatcatttgttat-ataaatagcttatacatgagcatttatatgata 22232751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 47132101 - 47132063
Alignment:
Q  81 tgtaagactatttgagagagcttatgaaaataacttatg 119  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  47132101 tgtaagactatttgagagaacttatgaaaacaacttatg 47132063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 50004787 - 50004713
Alignment:
Q  54 ttgactttattcactgacataaatacttgtaagactatttgagagagc-ttatgaaaataacttatgacatgttc 127  Q
    |||| |||||| ||||||||||  | |||||||||| |||||||| || ||||| ||| ||||||||||||||||    
T  50004787 ttgagtttatttactgacataagcaattgtaagactgtttgagagggccttatggaaacaacttatgacatgttc 50004713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 1395671 - 1395611
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacata 230  Q
    |||||||||||||||| ||| ||||||||||||  |||||||| | ||||||||||||||||    
T  1395671 agcttatatgaaaataatttgactttattttatcttttgttat-agaaatagcttatacata 1395611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 14548681 - 14548726
Alignment:
Q  78 acttgtaagactatttgagagagcttatgaaaataacttatgacat 123  Q
    |||||| ||||| |||||||||||||||||||| ||| ||||||||    
T  14548681 acttgtgagactgtttgagagagcttatgaaaacaacgtatgacat 14548726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 28779356 - 28779276
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgt-ttgttataaaaaatagcttatacataaacacttatatgatacgcgc 250  Q
    |||||||||||||||||||| ||||||||| || |  |||||| ||||| |||||||||| || || |||||||||| ||||    
T  28779356 agcttatatgaaaatagtttgactttatttcatctgatgttat-aaaaacagcttatacaaaagcaattatatgataagcgc 28779276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 2304224 - 2304280
Alignment:
Q  71 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 127  Q
    |||||| |||||| | |||||||||||||  ||||||||  ||||||||||||||||    
T  2304224 cataaacacttgtgaaactatttgagagaaattatgaaagcaacttatgacatgttc 2304280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 28842971 - 28843007
Alignment:
Q  214 aaaatagcttatacataaacacttatatgatacgcgc 250  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  28842971 aaaatagcttatacataagcacttatatgataagcgc 28843007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 33965564 - 33965632
Alignment:
Q  173 ttatatgaaaatagtttaactttatttta-tgtttgttataaaaaatagcttatacataaacacttata 240  Q
    ||||||||||| ||||| |||||||||||   |||||||||||||||| ||| |||| |||||| ||||    
T  33965564 ttatatgaaaacagtttgactttattttaccttttgttataaaaaataacttgtacaaaaacacctata 33965632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 37689454 - 37689509
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttat 225  Q
    |||||||||||||||| |||||||||| |||||  |||||||| |||||||||||||    
T  37689454 agcttatatgaaaataatttaactttactttatcttttgttat-aaaaatagcttat 37689509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 41028921 - 41028996
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 245  Q
    ||||||| |||||| || || |||||||||| | ||| |||||| ||| |||||||||||||| |||||||||||||    
T  41028921 agcttatttgaaaacagattgactttattttttcttttgttatagaaa-tagcttatacataagcacttatatgata 41028996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 42809305 - 42809242
Alignment:
Q  166 aaacagcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacat 229  Q
    |||||||||||||||||| | ||||||| ||||||||  |||||||| | |||||||||||||||    
T  42809305 aaacagcttatatgaaaacaatttaactatattttatcttttgttat-agaaatagcttatacat 42809242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 43116498 - 43116573
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 245  Q
    ||||||||||||||| |||| | || ||||||| ||| |||||| ||| ||||||| |||||||||||| |||||||    
T  43116498 agcttatatgaaaattgtttgatttgattttatcttttgttatagaaa-tagcttacacataaacacttgtatgata 43116573  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 50211845 - 50211805
Alignment:
Q  78 acttgtaagactatttgagagagcttatgaaaataacttat 118  Q
    |||||||||||| ||||||||| |||||||||| |||||||    
T  50211845 acttgtaagactgtttgagagaacttatgaaaacaacttat 50211805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 28581988 - 28582054
Alignment:
Q  178 tgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||| |||||||||||| ||| |  |||||||||| |||||||||||||||| |||||||    
T  28581988 tgaaaatagtttgactttattttatcttt-tgctaaaaaatagtttatacataaacacttctatgata 28582054  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 18628501 - 18628555
Alignment:
Q  66 actgacataaatacttgtaagactatttgagagagcttatgaaaataacttatga 120  Q
    ||||||||||| |||||| ||||| |||| ||||||||||||||| |||||||||    
T  18628501 actgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttatga 18628555  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 27123305 - 27123359
Alignment:
Q  71 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    ||||| ||||||| ||||| |||||||||||||||| ||| ||||||||||||||    
T  27123305 cataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgt 27123359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 2996693 - 2996636
Alignment:
Q  68 tgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    ||||||||  |||| | ||||| |||||||||||||||||||| ||||||||||||||    
T  2996693 tgacataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgt 2996636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 437504 - 437564
Alignment:
Q  172 cttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataa 231  Q
    |||||||||| | | |||||||||||||||| ||| | |||||||||||||||||||||||    
T  437504 cttatatgaacacaatttaactttattttatcttttgctataaaaaatagcttatacataa 437564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 22684583 - 22684666
Alignment:
Q  167 aacagcttatatgaaaatagtttaactttatttta-tgtttgttataaaaaatagcttatacataaacacttatatgatacgcgc 250  Q
    ||||||||||||||||| | ||| |||||||||||  ||||||||| | |||||||||||||| || || |||||||||| ||||    
T  22684583 aacagcttatatgaaaacaatttgactttattttaccgtttgttat-agaaatagcttatacagaagcatttatatgataagcgc 22684666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 27725316 - 27725277
Alignment:
Q  86 gactatttgagagagcttatgaaaataacttatgacatgt 125  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  27725316 gactgtttgagagagcttatggaaataacttatgacatgt 27725277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 33534119 - 33534174
Alignment:
Q  68 tgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacat 123  Q
    |||||||| ||||||| ||| |||||||||||||||||||||| || || ||||||    
T  33534119 tgacataagtacttgtgagagtatttgagagagcttatgaaaacaaattgtgacat 33534174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 42321952 - 42322018
Alignment:
Q  173 ttatatgaaaatagtttaactttattttatg-tttgttataaaaaatagcttatacataaacacttat 239  Q
    ||||||||||| | ||| ||||||||||||  |||||||||||| ||||||||| |||||||||||||    
T  42321952 ttatatgaaaacaatttgactttattttatcatttgttataaaa-atagcttattcataaacacttat 42322018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 44319949 - 44319875
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||| ||||  |||||||||||| ||| |||| | |||||| |||||||| | |||||||||||||    
T  44319949 agcttatatgaaaacagttcgactttattttatcttttttat-agaaatagtttatacatgagcacttatatgata 44319875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 54325107 - 54325182
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||| ||||| |||||||||||| |||  ||  | |||||| ||||||| || |||||||||||||    
T  54325107 agcttatatgaaaacagtttgactttattttatcttttgtaatagaaatagtttatacacaagcacttatatgata 54325182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 55437356 - 55437429
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||||| ||| ||||||||||||  ||||||| | |||||||||||| |||| | |||||||||||    
T  55437356 agcttatatgaaaataatttgactttattttat-attgttat-agaaatagcttatagataatcgcttatatgata 55437429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 24193583 - 24193510
Alignment:
Q  172 cttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||||||||||||| | ||||||  |||||| | ||||||| |||||||||||  ||||||||||||    
T  24193583 cttatatgaaaatagtttaactctgttttatattttgttgt-aaaaataacttatacataagtacttatatgata 24193510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 245
Target Start/End: Original strand, 32920491 - 32920543
Alignment:
Q  191 actttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||| || ||||||||| ||||||||| |||||||||||||||||||    
T  32920491 actttattttatctt-gttataaaa-atagcttatccataaacacttatatgata 32920543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 47970310 - 47970245
Alignment:
Q  178 tgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatga 243  Q
    |||||||||||| |||| ||||||| ||| |||||| ||| |||||||||||||| |||||||||||    
T  47970310 tgaaaatagtttgacttcattttatcttttgttatagaaa-tagcttatacataagcacttatatga 47970245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 54414950 - 54414869
Alignment:
Q  172 cttatatgaaaatagtttaactttattttatgtttgtt-ataaaaa--atagcttatacataaacacttatatgatacgcgc 250  Q
    |||||| |||||||| || |||||||||| | ||| || |||||||  ||||||||||||||| ||||||||||||| ||||    
T  54414950 cttataggaaaatagattgactttattttctctttctttataaaaataatagcttatacataagcacttatatgataagcgc 54414869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 1554968 - 1555017
Alignment:
Q  78 acttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 127  Q
    ||||| |||||| |||||||||  ||||||||||| ||||||||||||||    
T  1554968 acttgcaagactgtttgagagaatttatgaaaatagcttatgacatgttc 1555017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 4071882 - 4071811
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatg 242  Q
    |||||||||||||||| ||| ||||||||||||  |||||||| | |||||| ||||| |||||||||||||||    
T  4071882 agcttatatgaaaataatttgactttattttatcttttgttat-agaaatag-ttatatataaacacttatatg 4071811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 202
Target Start/End: Original strand, 5219573 - 5219602
Alignment:
Q  173 ttatatgaaaatagtttaactttattttat 202  Q
    ||||||||||||||||||||||||||||||    
T  5219573 ttatatgaaaatagtttaactttattttat 5219602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 23819087 - 23819015
Alignment:
Q  172 cttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||||||||| ||||| |||  ||||||| ||||||||  ||| || ||||||||||||||||| |||||||    
T  23819087 cttatatgaaaacagtttgactacattttatatttgttatggaaa-taacttatacataaacacttgtatgata 23819015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 36734890 - 36734818
Alignment:
Q  173 ttatatgaaaatagtttaactttatttta-tgtttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    ||||||||||||||||| |||||||||||   |||||||| | ||| || |||||||||| |||||||||||||    
T  36734890 ttatatgaaaatagtttgactttattttaccttttgttat-agaaagagattatacataagcacttatatgata 36734818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 49219139 - 49219059
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgatacgcgc 250  Q
    |||||||||||||||| ||| ||||||||||||  |||||||| | ||||| ||||||| ||| |||| |||||||| ||||    
T  49219139 agcttatatgaaaataatttgactttattttatattttgttat-agaaataacttatacctaaccactcatatgataagcgc 49219059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 52428766 - 52428733
Alignment:
Q  87 actatttgagagagcttatgaaaataacttatga 120  Q
    |||||||||||||||||||||||| |||||||||    
T  52428766 actatttgagagagcttatgaaaacaacttatga 52428733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 54986400 - 54986348
Alignment:
Q  191 actttattttatgtttgttataaaaaatagcttatacataaacacttatatgat 244  Q
    ||||||| |||| ||||||||| ||| ||||||||||||||| |||||||||||    
T  54986400 actttatcttatttttgttatagaaa-tagcttatacataaaaacttatatgat 54986348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 12162947 - 12162911
Alignment:
Q  176 tatgaaaatagtttaactttattttatgtttgttata 212  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  12162947 tatgaaaataatttgactttattttatgtttgttata 12162911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 21157768 - 21157693
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttatg-tttgttataaaaaatagcttatacataaacacttatatgata 245  Q
    |||||| ||||||| ||||| |||||| |||||  |||||||| |||| ||||| |||||||| |||||||||||||    
T  21157768 agcttacatgaaaacagtttgactttagtttatactttgttatcaaaa-tagctgatacataagcacttatatgata 21157693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 32724118 - 32724046
Alignment:
Q  171 gcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatga 243  Q
    ||||||||||||||||||| |||||||||||| |||  ||  | |||||| ||| |||||| |||| ||||||    
T  32724118 gcttatatgaaaatagtttgactttattttatcttttgtaatagaaatagattagacataagcactgatatga 32724046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 52645655 - 52645623
Alignment:
Q  215 aaatagcttatacataaacacttatatgatacg 247  Q
    |||||||| ||||||||||||||||||||||||    
T  52645655 aaatagctcatacataaacacttatatgatacg 52645623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 56007789 - 56007734
Alignment:
Q  78 acttgtaagactatttgagagagcttatgaaaataacttatgacatgttcgattgtc 134  Q
    |||||||||||| |||||||||||| ||  || |||||||||||||| |||||||||    
T  56007789 acttgtaagactgtttgagagagctaatacaagtaacttatgacatg-tcgattgtc 56007734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 6568 - 6600
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat 202  Q
    |||||||||||||||||||| ||||||||||||    
T  6568 agcttatatgaaaatagtttgactttattttat 6600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 13588 - 13620
Alignment:
Q  170 agcttatatgaaaatagtttaactttattttat 202  Q
    |||||||||||||||||||| ||||||||||||    
T  13588 agcttatatgaaaatagtttgactttattttat 13620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 21334 - 21409
Alignment:
Q  156 tagcttatagaaacagcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataa 231  Q
    ||||||||  |||||||||||| ||||| | ||||||||||||||||  |||  ||| |||||||||||||||||||    
T  21334 tagcttatgaaaacagcttatacgaaaacaatttaactttattttatcttttcctat-aaaaatagcttatacataa 21409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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