View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11577_high_41 (Length: 240)
Name: NF11577_high_41
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11577_high_41 |
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| [»] chr8 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 39047208 - 39047332
Alignment:
| Q |
123 |
gttttattcgagcgtgagttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgttactta-------cagcgttacttaactaacgca |
215 |
Q |
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| T |
39047208 |
gttttattccagcgtgagttaacccacacggcattcgttaagtaacacagagtttaacacttgcgttatttaacctgcgcagcgttagttaactaacgca |
39047307 |
T |
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| Q |
216 |
tagcttttcaattgcgttagttaac |
240 |
Q |
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||| |||||| |||||||||||||| |
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| T |
39047308 |
tagtttttcacttgcgttagttaac |
39047332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 39047096 - 39047143
Alignment:
| Q |
11 |
caaaggttcctagagcatgaatttagaataacagttcatactcttttt |
58 |
Q |
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| T |
39047096 |
caaaggttcctaaagcatgaatttagaataacagttcatactcttttt |
39047143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 9512438 - 9512495
Alignment:
| Q |
137 |
tgagttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgttactta |
194 |
Q |
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| T |
9512438 |
tgagttaactcacgcagcgttagttaaataacacagagtttaacacttgcgttactta |
9512495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 47441684 - 47441624
Alignment:
| Q |
134 |
gcgtgagttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgttactta |
194 |
Q |
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| T |
47441684 |
gcgtgagttaactcacgcagctttagttaagtaacgcagagtttaacacttgcgttactta |
47441624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 43138966 - 43138908
Alignment:
| Q |
136 |
gtgagttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgttactta |
194 |
Q |
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|||||||||| ||||| ||||| ||||||||| || ||||||||||||||||| ||||| |
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| T |
43138966 |
gtgagttaacacacgcagcgttagttaagtaacacggagtttaacacttgcgtcactta |
43138908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 16935594 - 16935543
Alignment:
| Q |
139 |
agttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgtta |
190 |
Q |
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| T |
16935594 |
agttaactcacgcagcgttagttaagtagcacagagtttaacacttgcgtta |
16935543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 45864951 - 45864996
Alignment:
| Q |
195 |
cagcgttacttaactaacgcatagcttttcaattgcgttagttaac |
240 |
Q |
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|||||||||||||||||||||||| ||| || |||| ||||||||| |
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| T |
45864951 |
cagcgttacttaactaacgcatagttttacacttgcattagttaac |
45864996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 54185607 - 54185652
Alignment:
| Q |
195 |
cagcgttacttaactaacgcatagcttttcaattgcgttagttaac |
240 |
Q |
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|||||||||||||||| ||||||| ||| || |||||||||||||| |
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| T |
54185607 |
cagcgttacttaactagcgcatagttttacacttgcgttagttaac |
54185652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 29195311 - 29195266
Alignment:
| Q |
195 |
cagcgttacttaactaacgcatagcttttcaattgcgttagttaac |
240 |
Q |
| |
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|||||||| ||||||||||||||| |||||| |||||||||||||| |
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| T |
29195311 |
cagcgttagttaactaacgcatagtttttcacttgcgttagttaac |
29195266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 16314014 - 16313969
Alignment:
| Q |
195 |
cagcgttacttaactaacgcatagcttttcaattgcgttagttaac |
240 |
Q |
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|||||||| ||||||||||||||| |||||| |||||||||||||| |
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| T |
16314014 |
cagcgttagttaactaacgcatagtttttcacttgcgttagttaac |
16313969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 1181497 - 1181539
Alignment:
| Q |
198 |
cgttacttaactaacgcatagcttttcaattgcgttagttaac |
240 |
Q |
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||||| ||||||||||||||| |||||| |||||||||||||| |
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| T |
1181497 |
cgttagttaactaacgcatagtttttcacttgcgttagttaac |
1181539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 7014985 - 7015030
Alignment:
| Q |
195 |
cagcgttacttaactaacgcatagcttttcaattgcgttagttaac |
240 |
Q |
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|||||||| ||||||||||| ||| |||||| |||||||||||||| |
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| T |
7014985 |
cagcgttagttaactaacgcgtagtttttcacttgcgttagttaac |
7015030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 185488 - 185443
Alignment:
| Q |
195 |
cagcgttacttaactaacgcatagcttttcaattgcgttagttaac |
240 |
Q |
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|||||||| ||||||||||||||| ||| || |||||||||||||| |
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| T |
185488 |
cagcgttagttaactaacgcatagttttacacttgcgttagttaac |
185443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 30842114 - 30842159
Alignment:
| Q |
195 |
cagcgttacttaactaacgcatagcttttcaattgcgttagttaac |
240 |
Q |
| |
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|||||||| ||||||||||||||| ||| ||||| ||||||||||| |
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| T |
30842114 |
cagcgttagttaactaacgcataggtttacaattacgttagttaac |
30842159 |
T |
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