View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11577_high_43 (Length: 227)

Name: NF11577_high_43
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11577_high_43
NF11577_high_43
[»] chr6 (3 HSPs)
chr6 (127-209)||(363531-363613)
chr6 (130-187)||(20006675-20006732)
chr6 (152-184)||(34559540-34559572)
[»] chr3 (5 HSPs)
chr3 (127-197)||(47683908-47683978)
chr3 (141-187)||(32187146-32187192)
chr3 (127-186)||(43460506-43460565)
chr3 (127-187)||(30633707-30633767)
chr3 (127-187)||(50279980-50280040)
[»] chr4 (4 HSPs)
chr4 (127-196)||(34259944-34260013)
chr4 (154-187)||(29949707-29949740)
chr4 (127-187)||(18634819-18634879)
chr4 (127-187)||(3223107-3223167)
[»] chr8 (4 HSPs)
chr8 (127-187)||(33511719-33511779)
chr8 (127-187)||(20284825-20284885)
chr8 (127-187)||(21071454-21071514)
chr8 (128-187)||(102349-102408)
[»] chr2 (4 HSPs)
chr2 (130-186)||(32755799-32755855)
chr2 (141-187)||(28508484-28508530)
chr2 (130-187)||(38689030-38689087)
chr2 (154-187)||(39454272-39454305)
[»] chr1 (2 HSPs)
chr1 (128-187)||(40605314-40605373)
chr1 (127-187)||(38627337-38627397)
[»] chr5 (3 HSPs)
chr5 (146-187)||(27546557-27546598)
chr5 (127-187)||(12827859-12827919)
chr5 (155-187)||(36548414-36548446)


Alignment Details
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 363531 - 363613
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaa-tggttatacaaatatcatcaccctaattatttcgagttaa 209  Q
    ||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  363531 aagaagagagaaaaagaaa-ttgtcttaaaagttttcacaaaaatggttatacaaatatcatcaccctaattatttcgagttaa 363613  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 20006732 - 20006675
Alignment:
Q  130 aagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    ||||||||||||||||||||||  ||||||| |||| |||| || |||||||||||||    
T  20006732 aagagagaaaaagaaggttgtcacaaaagttatcaccaaatagtgatacaaatatcat 20006675  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 34559572 - 34559540
Alignment:
Q  152 ttaaaagttttcacaaaatggttatacaaatat 184  Q
    ||||||||| |||||||||||||||||||||||    
T  34559572 ttaaaagttatcacaaaatggttatacaaatat 34559540  T

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Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 47683908 - 47683978
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcatcaccctaatt 197  Q
    ||||||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||||| || ||||||    
T  47683908 aagaagagagaaagagaaggttgtctcaaaagttgtcacaaaatggttgtacaaatatcattactctaatt 47683978  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 32187192 - 32187146
Alignment:
Q  141 agaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||||||    
T  32187192 agaaggttgtcataaaagttgtcacaaaatggttgtacaaatatcat 32187146  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 43460506 - 43460565
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatca 186  Q
    |||||||||||||| ||||| ||||  ||||||| |||||||| |||| |||||||||||    
T  43460506 aagaagagagaaaatgaaggctgtcccaaaagttgtcacaaaaaggttgtacaaatatca 43460565  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 30633767 - 30633707
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    ||||||||||||||| ||||||||| | |||||| ||| ||||| | | ||||||||||||    
T  30633767 aagaagagagaaaaataaggttgtcattaaagttatcataaaatagatgtacaaatatcat 30633707  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 50280040 - 50279980
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    ||||||||||||||| ||||||||| | |||||| |||  |||||| | ||||||||||||    
T  50280040 aagaagagagaaaaacaaggttgtcattaaagttgtcatgaaatggatgtacaaatatcat 50279980  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 34259944 - 34260013
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcatcaccctaat 196  Q
    ||||||||||||||||||| |||||  ||||||| |||| |||||||| |||||||||||| || |||||    
T  34259944 aagaagagagaaaaagaagtttgtcacaaaagttgtcaccaaatggttgtacaaatatcattactctaat 34260013  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 29949707 - 29949740
Alignment:
Q  154 aaaagttttcacaaaatggttatacaaatatcat 187  Q
    ||||||||||||||||||||||||||||||||||    
T  29949707 aaaagttttcacaaaatggttatacaaatatcat 29949740  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 18634819 - 18634879
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    ||||||||||||||| ||||||||||||||| || |  |||||||||| || |||||||||    
T  18634819 aagaagagagaaaaataaggttgtcttaaaaattgtttcaaaatggttgtataaatatcat 18634879  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 3223107 - 3223167
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    |||||||||||||||||||||||||   ||||||||||   ||||| | ||||||||||||    
T  3223107 aagaagagagaaaaagaaggttgtcactaaagttttcatggaatggatgtacaaatatcat 3223167  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 33511719 - 33511779
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    |||||||||||| ||||| ||||||  ||||||||||||||||| ||| ||||||||||||    
T  33511719 aagaagagagaagaagaatgttgtcccaaaagttttcacaaaatagttgtacaaatatcat 33511779  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 20284825 - 20284885
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    |||||||||||||||||||||||||  ||||||| |||  |||||||| | ||||||||||    
T  20284825 aagaagagagaaaaagaaggttgtcacaaaagttgtcatcaaatggttgttcaaatatcat 20284885  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 21071454 - 21071514
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    |||||||||||||||||||||||||  ||||||| |||  |||||||| | ||||||||||    
T  21071454 aagaagagagaaaaagaaggttgtcacaaaagttgtcatcaaatggttgttcaaatatcat 21071514  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 102408 - 102349
Alignment:
Q  128 agaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    ||||| ||| |||||||||||| | |||||||| | ||||||||||| ||||||||||||    
T  102408 agaagcgaggaaaagaaggttggcctaaaagttgtaacaaaatggttgtacaaatatcat 102349  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 32755799 - 32755855
Alignment:
Q  130 aagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatca 186  Q
    |||||||||||| |||| ||||| ||||||| ||||||||||||| || ||||||||    
T  32755799 aagagagaaaaataaggctgtctcaaaagttgtcacaaaatggttgtagaaatatca 32755855  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 28508530 - 28508484
Alignment:
Q  141 agaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    |||||||||||  ||||||| ||||||||||||| ||||||||||||    
T  28508530 agaaggttgtcccaaaagttgtcacaaaatggttgtacaaatatcat 28508484  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 38689030 - 38689087
Alignment:
Q  130 aagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    |||||||| |||||||||||||  |||| ||||||| |||||||| | ||||||||||    
T  38689030 aagagagagaaagaaggttgtcccaaaaattttcactaaatggttgttcaaatatcat 38689087  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 39454272 - 39454305
Alignment:
Q  154 aaaagttttcacaaaatggttatacaaatatcat 187  Q
    ||||||| ||||||||||||||||||||||||||    
T  39454272 aaaagttgtcacaaaatggttatacaaatatcat 39454305  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 40605373 - 40605314
Alignment:
Q  128 agaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    |||||||||||||||||||||||| |||||||| | |  |||||||| | ||||||||||    
T  40605373 agaagagagaaaaagaaggttgtcataaaagttgttagcaaatggttgttcaaatatcat 40605314  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 38627397 - 38627337
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    |||||||| |||||| ||  |||||||||||||| ||||||||| | | ||||||||||||    
T  38627397 aagaagagggaaaaataatattgtcttaaaagttatcacaaaatagatgtacaaatatcat 38627337  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 27546557 - 27546598
Alignment:
Q  146 gttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    ||||||||||||||| |  |||||||||||||||||||||||    
T  27546557 gttgtcttaaaagttgttgcaaaatggttatacaaatatcat 27546598  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 12827919 - 12827859
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    ||||||||||| ||||||||||||| |||||||  | |  |||||||||| ||||||||||    
T  12827919 aagaagagagagaaagaaggttgtcataaaagtcattagtaaatggttattcaaatatcat 12827859  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 36548414 - 36548446
Alignment:
Q  155 aaagttttcacaaaatggttatacaaatatcat 187  Q
    |||||| ||||||||||||||||||||||||||    
T  36548414 aaagttgtcacaaaatggttatacaaatatcat 36548446  T

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