View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11577_high_7 (Length: 430)
Name: NF11577_high_7
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11577_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Original strand, 29662568 - 29662967
Alignment:
| Q |
17 |
agtaccaaagttgaatcaattaaaagagacttctaatagttattattattttgatgtgaactaagaatgtctaaggaagacatgtggcacctttcaatat |
116 |
Q |
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| T |
29662568 |
agtaccaaagttgaatcaattaaaagagacttctaat-gttattattattttgatgtgaactaagaatgtctaaggaagacatgtggcacctttcaatat |
29662666 |
T |
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| Q |
117 |
cctaaaatgtcacattatgggacttggcattgtgcatgcaagaataacggccataaacagagaattaaattatatgcagaagaagctatatatgaggaca |
216 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29662667 |
cctaaa-tgtcacattatcggacttggcattgtgcatgcatgaacaacggccataaacagagaattaaattatatgcagaagaagctatatatgaggaca |
29662765 |
T |
|
| Q |
217 |
tttaatttctaggatttggtggagcaatgaagttccaagtaaaattacaaggattggccacatttgatcgcaattctatgtaattagaaggattgtgaca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29662766 |
tttaatttctaggatttggtggagcaatgaagttccaagtaaaattacaaggattggccacatttgatcgcaattctatgtaattagaaggattgtgaca |
29662865 |
T |
|
| Q |
317 |
caacaacaatttaaaacctttgttagtagtagttgttggatgtgttagaacatcaaccggtaacaagaaacgaaaaaattgtaagaaaatgagacacgat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29662866 |
caacaacaatttaaaacctttgttagtagtagttgttggatgtgttagaacatcaaccggtaacaagaaacgaaaaaattgtaagaaaatgagacacgat |
29662965 |
T |
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