View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11577_low_14 (Length: 369)
Name: NF11577_low_14
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11577_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 359
Target Start/End: Original strand, 4387051 - 4387413
Alignment:
| Q |
17 |
ataatggatactggttgactgatttttgatgtgggattttgaccatagaaatacttaggaccactacttttggcatctaatgctccacacactctttccc |
116 |
Q |
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| T |
4387051 |
ataatggatactggttgactgatttttgatgtgggattttgaccatagaaatacttaggaccactacttttggcatctaatgctc-acacactctttccc |
4387149 |
T |
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| Q |
117 |
tcttcactttgttctgtccataagtgcgatatatagtacttctatttacttgtccctcaatttttcagtcttttggcctgtagtgctcctttaccatatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4387150 |
tcttcactttgttctgtccataagtgcgatatatagtacttctatttacttgcccctcaatttttcagtcttttggcctgtggtgctcctttaccatatc |
4387249 |
T |
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| Q |
217 |
ctatcctataatgcatgttcctgtttcta---------------------taataaaattttaggatgaaacggatgctatccaatctaaagaaaaacct |
295 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
4387250 |
ctatcctataatgcatgttcctgtttctataataatttatcttttttctttaataaaattttaggatgaaacggatgctattcaatctaaagaaaaatct |
4387349 |
T |
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| Q |
296 |
ttgaacttaaaaaacacttacaaatgtattttatcttcgtctaaatgatagtttctctgcttct |
359 |
Q |
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||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4387350 |
ttgaatttaaagaacgcttacaaatgtattttatcttcgtctaaatgatagtttctctgtttct |
4387413 |
T |
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