View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11577_low_17 (Length: 355)
Name: NF11577_low_17
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11577_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 5 - 337
Target Start/End: Original strand, 41728874 - 41729204
Alignment:
| Q |
5 |
tgatcacattgcacatttattactgttagcaaagcaggagaaccaagattctctcttacataacaaacaaggaccctcacatttaaataactcaattctg |
104 |
Q |
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| T |
41728874 |
tgatcacattgcacatttattactgttagcaaagcaggagaaccaagattctctcttacataacaaacaaggaccctcacatttaaataactcaattctg |
41728973 |
T |
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| Q |
105 |
aatttccaaacataaaaaactgcnnnnnnnnnnttcaagcctatactctagataacataatcataaaactcagaaatatgtgcaacatggtccatagtgt |
204 |
Q |
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| T |
41728974 |
aatttccaaacataaaa--ctgcaaacaattttttcaagcctatactctagataacataatcataaaactcagaaatatgtgcaacatggtccatagtgt |
41729071 |
T |
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| Q |
205 |
ggctaggaatcttatcaagtttaataggattattcttccctccaatcaattttgccggattcccaaccaccgtagtccttggaggaacttccttgatcac |
304 |
Q |
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| T |
41729072 |
ggctaggaatcttatcaagtttaataggattattcttccctccaatcaattttgccggattcccaaccaccgtagtccttggaggaacttccttgatcac |
41729171 |
T |
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| Q |
305 |
aactgaaccagcgccaattttagcaccatcacc |
337 |
Q |
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| T |
41729172 |
aactgaaccggcaccaattttagcaccatcacc |
41729204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 149 - 337
Target Start/End: Original strand, 23158111 - 23158299
Alignment:
| Q |
149 |
actctagataacataatcataaaactcagaaatatgtgcaacatggtccatagtgtggctaggaatcttatcaagtttaataggattattcttccctcca |
248 |
Q |
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| T |
23158111 |
actctaaataacataatcagaccactcagaaatatatgaagtatggtccatagtagagctaggaatcttatccaacatgataggattatcttttccacca |
23158210 |
T |
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| Q |
249 |
atcaattttgccggattcccaaccaccgtagtccttggaggaacttccttgatcacaactgaaccagcgccaattttagcaccatcacc |
337 |
Q |
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| T |
23158211 |
atcaacttagctggatttccaacagcagtagttcttggtggaacatccttcaacacaacagaaccagcaccaatcttagcaccatcacc |
23158299 |
T |
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