View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11577_low_18 (Length: 351)

Name: NF11577_low_18
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11577_low_18
NF11577_low_18
[»] chr3 (1 HSPs)
chr3 (13-351)||(20018544-20018879)


Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 351
Target Start/End: Original strand, 20018544 - 20018879
Alignment:
Q  13 gagatgaaccgagggttgaaaaaagaaattctcttttatttattggatcaaatgtgaattaaccggagattacatacatcacacacgtaaactagagtga 112  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  20018544 gagaagaatcgagggttgaaaaaagaaattctcttttatttattggatcaaatgtgaatgaacaggagattacatacatcacacacgtaaactagagtga 20018643  T
Q  113 acttgctgattcaaagttc-gagttaaatgcatttgatnnnnnnnnttaaaagattaatctacaacaattaaataatttaaaggactatatcgtgctcca 211  Q
    ||||||||||||||||||| ||||||||  ||||||||        ||||||    |||||||||||| |||||||||||||||||||||||||||||||    
T  20018644 acttgctgattcaaagttccgagttaaacacatttgataaaaaaaattaaaa----aatctacaacaagtaaataatttaaaggactatatcgtgctcca 20018739  T
Q  212 agttattttctcttatgaagtttgaactttgaagtctactacaagtgttgtgagaaaaataccaaatccaaaattgtaagcatgcagatagtagggtgcc 311  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20018740 agttattttctcttatgaagtttgaactttgaattctactacaagtgttgtgagaaaaataccaaatccaaaattgtaagcatgcagatagtagggtgcc 20018839  T
Q  312 aataattttcactgaattcattgtttgtttttctaaaacc 351  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  20018840 aataattttcactgaattcattgtttgtttttctaaaacc 20018879  T

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