View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11577_low_19 (Length: 346)

Name: NF11577_low_19
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11577_low_19
NF11577_low_19
[»] chr4 (19 HSPs)
chr4 (11-331)||(49376612-49376926)
chr4 (188-268)||(9469825-9469905)
chr4 (188-263)||(48731185-48731260)
chr4 (188-268)||(36543829-36543909)
chr4 (188-271)||(36156306-36156389)
chr4 (188-271)||(12673040-12673123)
chr4 (188-271)||(40797875-40797958)
chr4 (188-271)||(46944556-46944639)
chr4 (188-271)||(51995123-51995206)
chr4 (188-265)||(50146930-50147007)
chr4 (188-271)||(80542-80625)
chr4 (188-271)||(7505574-7505657)
chr4 (188-267)||(11055238-11055317)
chr4 (188-230)||(12789564-12789606)
chr4 (188-230)||(21441667-21441709)
chr4 (188-230)||(45674921-45674963)
chr4 (188-265)||(34980516-34980593)
chr4 (189-230)||(44791256-44791297)
chr4 (190-234)||(32397712-32397756)
[»] chr5 (20 HSPs)
chr5 (188-268)||(38522873-38522953)
chr5 (188-271)||(3801376-3801459)
chr5 (188-266)||(31620918-31620996)
chr5 (270-331)||(3804075-3804136)
chr5 (188-262)||(32156958-32157032)
chr5 (188-271)||(20190597-20190679)
chr5 (188-271)||(27450593-27450676)
chr5 (188-267)||(31021912-31021991)
chr5 (188-271)||(14500718-14500801)
chr5 (188-271)||(20189018-20189101)
chr5 (188-271)||(27196122-27196205)
chr5 (188-271)||(41783370-41783453)
chr5 (188-228)||(15933251-15933291)
chr5 (188-259)||(29328100-29328171)
chr5 (188-271)||(32945033-32945116)
chr5 (188-271)||(39407451-39407534)
chr5 (188-230)||(18880278-18880320)
chr5 (188-266)||(26299897-26299975)
chr5 (188-230)||(27906184-27906226)
chr5 (188-265)||(10327981-10328058)
[»] chr7 (19 HSPs)
chr7 (188-271)||(7447926-7448009)
chr7 (270-331)||(7445413-7445474)
chr7 (188-259)||(20401058-20401129)
chr7 (188-265)||(3942232-3942309)
chr7 (188-271)||(26719865-26719948)
chr7 (188-271)||(33898956-33899039)
chr7 (188-267)||(43052926-43053005)
chr7 (189-271)||(49034237-49034319)
chr7 (188-268)||(37401578-37401658)
chr7 (188-259)||(665859-665930)
chr7 (188-259)||(5776142-5776213)
chr7 (188-271)||(11595808-11595891)
chr7 (188-271)||(18250005-18250088)
chr7 (188-271)||(18740230-18740313)
chr7 (188-271)||(21760595-21760678)
chr7 (188-271)||(45055778-45055861)
chr7 (188-267)||(45176299-45176378)
chr7 (188-230)||(36927090-36927132)
chr7 (270-327)||(8112740-8112797)
[»] chr3 (12 HSPs)
chr3 (188-271)||(39469543-39469626)
chr3 (190-271)||(39135399-39135480)
chr3 (188-271)||(46293225-46293308)
chr3 (188-271)||(54393455-54393538)
chr3 (188-233)||(19560786-19560831)
chr3 (188-271)||(12710747-12710830)
chr3 (188-271)||(33438743-33438826)
chr3 (190-271)||(40943606-40943687)
chr3 (188-230)||(32689255-32689297)
chr3 (188-242)||(54432189-54432243)
chr3 (188-228)||(25253790-25253830)
chr3 (188-228)||(30743660-30743700)
[»] scaffold0022 (1 HSPs)
scaffold0022 (188-271)||(124493-124576)
[»] chr1 (25 HSPs)
chr1 (188-271)||(15014360-15014443)
chr1 (188-271)||(25124897-25124980)
chr1 (188-271)||(35810763-35810846)
chr1 (188-271)||(7596438-7596521)
chr1 (188-271)||(14578597-14578680)
chr1 (188-271)||(20347711-20347794)
chr1 (188-271)||(28006395-28006478)
chr1 (188-271)||(40159642-40159725)
chr1 (188-271)||(42916126-42916209)
chr1 (188-268)||(23916858-23916938)
chr1 (188-271)||(12224587-12224670)
chr1 (188-271)||(15257183-15257266)
chr1 (188-267)||(15306542-15306621)
chr1 (188-271)||(19508573-19508656)
chr1 (188-271)||(20349191-20349274)
chr1 (188-259)||(24469829-24469900)
chr1 (188-271)||(29677531-29677614)
chr1 (188-267)||(32179907-32179986)
chr1 (188-267)||(36419150-36419229)
chr1 (188-271)||(46264956-46265039)
chr1 (188-259)||(47602874-47602945)
chr1 (188-271)||(47983300-47983383)
chr1 (188-230)||(7702921-7702963)
chr1 (188-266)||(31816618-31816696)
chr1 (188-265)||(24575960-24576037)
[»] chr6 (6 HSPs)
chr6 (188-271)||(5640264-5640347)
chr6 (188-271)||(13312067-13312152)
chr6 (188-271)||(3081730-3081813)
chr6 (188-259)||(8200688-8200759)
chr6 (188-271)||(10961808-10961891)
chr6 (188-271)||(33110503-33110586)
[»] chr8 (6 HSPs)
chr8 (188-271)||(33279989-33280072)
chr8 (188-271)||(34516183-34516266)
chr8 (188-266)||(39478100-39478178)
chr8 (188-266)||(43384844-43384922)
chr8 (188-271)||(27189094-27189177)
chr8 (188-230)||(453569-453611)
[»] chr2 (8 HSPs)
chr2 (188-271)||(30713201-30713284)
chr2 (188-271)||(11027953-11028036)
chr2 (190-266)||(20203728-20203804)
chr2 (188-271)||(17616312-17616395)
chr2 (188-271)||(27464584-27464667)
chr2 (188-259)||(33831552-33831623)
chr2 (188-230)||(27634757-27634799)
chr2 (186-271)||(27902449-27902534)
[»] scaffold0260 (2 HSPs)
scaffold0260 (188-271)||(10034-10117)
scaffold0260 (188-271)||(11514-11597)
[»] scaffold0224 (1 HSPs)
scaffold0224 (188-271)||(7320-7403)
[»] scaffold0223 (1 HSPs)
scaffold0223 (188-265)||(14477-14554)
[»] scaffold0316 (1 HSPs)
scaffold0316 (188-230)||(19382-19424)
[»] scaffold0171 (1 HSPs)
scaffold0171 (188-262)||(21141-21215)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 331
Target Start/End: Original strand, 49376612 - 49376926
Alignment:
Q  11 cataggtgacttatgtcatggaaattcgtcaagagtggggcagactccaaagtttaaaaagatgcgacaatatatttacatattattctcaacaaagtct 110  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  49376612 catagatgacttatgtcatggaaattcgtcaagagtggggcagactccaaagtttaaaaagatgcgacaatat--ttacatattattctcaacaaagtct 49376709  T
Q  111 ttatgccttgtgcttcgatcttctttgtaaccgaaaaataaaatatgcttgcgccaataatagggctgataatgaattgaaccgaaccaactcgaatata 210  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||      |||||||||||| |||||||||    
T  49376710 ttatgccttgcgcttcgatcttctttgtaatcgaaaaataaaatatgcttgcgccaatagtagggctgacaa-----cgaaccgaaccaaatcgaatata 49376804  T
Q  211 gttcgtaattcgactcgataattggtccattgaatttga-tccatgaaccaaatgagccgaaggctcttaatgatatgtacctggagtatgttgataggc 309  Q
    |||||||||| ||||||| ||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  49376805 gttcgtaatttgactcgacaattggtccattgaacttgattccatgaactaaatgagccgaaggctcttaatgatatgtacctagagtatgctgataggc 49376904  T
Q  310 ttcaggagcatagagaagaagg 331  Q
    |||||||||||| |||||||||    
T  49376905 ttcaggagcataaagaagaagg 49376926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 188 - 268
Target Start/End: Complemental strand, 9469905 - 9469825
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagcc 268  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| | |||||||||||||||||    
T  9469905 tgaaccgaaccaactcgaatatagttcgtaattcgactcgacaattggtctattgaacttggttcatgaaccaaatgagcc 9469825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 48731185 - 48731260
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaat 263  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | ||||||||||||    
T  48731185 tgaaccgaaccaactcgaatatagttcgaaattcgactcgacaattggtccattgaatttggttcatgaaccaaat 48731260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 188 - 268
Target Start/End: Complemental strand, 36543909 - 36543829
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagcc 268  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | |||||||||||| ||||    
T  36543909 tgaactgaaccaactcgaatatagttcgtaattcgactcgacaattggtccattgaacttggttcatgaaccaaataagcc 36543829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 36156306 - 36156389
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||||||||||||| || |||||||||||||| |||| ||||| | | ||||| ||| | | ||||||||||||||||||    
T  36156306 tgaaccgaaccaactcgattaaagttcgtaattcgattcgacaattgattcgttgaacttggttcttgaaccaaatgagccgaa 36156389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 12673040 - 12673123
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||||| ||||||||  |||||| ||||||||||   | ||||| ||| | ||||||||||||||| ||||    
T  12673040 tgaaccgaaccaactcgaaaatagttcgagattcgattcgataattgactcgttgaacttggttcatgaaccaaatgagtcgaa 12673123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 40797958 - 40797875
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||||||||||| || ||||||||  | | || |||||||||||| ||||||| ||| | ||||||||||||||| ||||    
T  40797958 tgaaccgaaccaactcaaaaatagttcgatacttgattcgataattggttcattgaacttggttcatgaaccaaatgagtcgaa 40797875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 46944556 - 46944639
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||||||||||| || ||||||||  |||||| |||||||||||  | ||||| ||| | ||||||||||||||| ||||    
T  46944556 tgaaccgaaccaactcaaaaatagttcgagattcgattcgataattggctcgttgaacttggttcatgaaccaaatgagtcgaa 46944639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 51995206 - 51995123
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||||| ||||||||  | |||| |||||||||  | | ||||| ||| | ||||||||||||||||||||    
T  51995206 tgaaccgaaccaactcgaaaatagttcgagactcgattcgataattaattcgttgaacttggttcatgaaccaaatgagccgaa 51995123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 265
Target Start/End: Original strand, 50146930 - 50147007
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatga 265  Q
    ||||||||||||| |||| || |||||||||||||| |||| ||||| | | ||||| ||| | ||||||||||||||    
T  50146930 tgaaccgaaccaattcgattaaagttcgtaattcgattcgacaattgattcgttgaacttggttcatgaaccaaatga 50147007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 80625 - 80542
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||| |||||||||| |||||||| |||| || ||| |||||| | | ||||| ||| | ||||||||||||||| ||||    
T  80625 tgaaccgatccaactcgaaaatagttcgaaatttgattcggtaattgtttcgttgaacttggttcatgaaccaaatgagtcgaa 80542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 7505657 - 7505574
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||  ||||||||||| |||||  || | |||||| ||||| || | ||||| ||||| ||||||||||||||||||||    
T  7505657 tgaaccgatacaactcgaataaagttcagaacttgactcggtaattagttcgttgaacttgattcatgaaccaaatgagccgaa 7505574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 267
Target Start/End: Original strand, 11055238 - 11055317
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagc 267  Q
    ||||||||||||||||||  |||||||| || |||| |||||||||    ||||||| ||| | ||||||||||||||||    
T  11055238 tgaaccgaaccaactcgacaatagttcggaactcgattcgataattaactcattgaacttggttcatgaaccaaatgagc 11055317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 12789564 - 12789606
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgata 230  Q
    |||||||||||||||||| |||||||||  |||||||||||||    
T  12789564 tgaaccgaaccaactcgattatagttcgacattcgactcgata 12789606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 21441709 - 21441667
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgata 230  Q
    |||||||||||||||||| |||||||||  |||||||||||||    
T  21441709 tgaaccgaaccaactcgattatagttcgacattcgactcgata 21441667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 45674963 - 45674921
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgata 230  Q
    |||||||||||||||||| |||||||||  |||||||||||||    
T  45674963 tgaaccgaaccaactcgattatagttcgacattcgactcgata 45674921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 265
Target Start/End: Original strand, 34980516 - 34980593
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatga 265  Q
    |||||| |||||||||||| |||||| |  | |||| |||||||||| | ||||||| ||||| |||||| |||||||    
T  34980516 tgaaccaaaccaactcgaaaatagtttgagactcgattcgataattgattcattgaacttgattcatgaatcaaatga 34980593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 44791256 - 44791297
Alignment:
Q  189 gaaccgaaccaactcgaatatagttcgtaattcgactcgata 230  Q
    ||||||||||||||||| |||||||||  |||||||||||||    
T  44791256 gaaccgaaccaactcgattatagttcgacattcgactcgata 44791297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 32397712 - 32397756
Alignment:
Q  190 aaccgaaccaactcgaatatagttcgtaattcgactcgataattg 234  Q
    ||||||||||| |||| || ||||||||||||||||||| |||||    
T  32397712 aaccgaaccaattcgattaaagttcgtaattcgactcgacaattg 32397756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 188 - 268
Target Start/End: Original strand, 38522873 - 38522953
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagcc 268  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | |||||||||||||||||    
T  38522873 tgaaccgaaccaactcgaatatagttcgtaatttgactcgataattggtccattgaacttggttcatgaaccaaatgagcc 38522953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 3801376 - 3801459
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| | ||||||||||||||||||||    
T  3801376 tgaaccgaaccaactcgaatatagttcgtaattcgactcgacaattggttcattgaacttggttcatgaaccaaatgagccgaa 3801459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 188 - 266
Target Start/End: Complemental strand, 31620996 - 31620918
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgag 266  Q
    ||||||||||||||| |||||||||||| |||||||||||| |||| |||||||||||||| | |||||||| ||||||    
T  31620996 tgaaccgaaccaacttgaatatagttcgaaattcgactcgacaattagtccattgaatttggttcatgaacctaatgag 31620918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 3804075 - 3804136
Alignment:
Q  270 aaggctcttaatgatatgtacctggagtatgttgataggcttcaggagcatagagaagaagg 331  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||    
T  3804075 aaggctcttaatgatatgtacctagagtatgctgataagcttcaggagcatagagaagaagg 3804136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 32156958 - 32157032
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaa 262  Q
    ||||||||||||| |||||||||||||||||||||||| || ||||||||||||||| ||| | ||||| |||||    
T  32156958 tgaaccgaaccaattcgaatatagttcgtaattcgacttgacaattggtccattgaacttgtttcatgagccaaa 32157032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 20190597 - 20190679
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||||||||||| | || |||||||||||||| |||||||||| | ||| ||| ||| | ||||||||||||||||||||    
T  20190597 tgaaccgaaccaactctatta-agttcgtaattcgattcgataattgattcatcgaacttggttcatgaaccaaatgagccgaa 20190679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 27450593 - 27450676
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||||| ||||| ||  |||||| |||||||||| | | ||||||||||| |||||||| |||||| ||||    
T  27450593 tgaaccgaaccaactcgaaaatagtgcgagattcgattcgataattgattcgttgaatttgattcatgaacctaatgagtcgaa 27450676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 31021991 - 31021912
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagc 267  Q
    |||||||||||||||||||||||||||| || ||||||||||||||    | |||| |||| | ||||||||||||||||    
T  31021991 tgaaccgaaccaactcgaatatagttcggaactcgactcgataattaactcgttgagtttggttcatgaaccaaatgagc 31021912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 14500718 - 14500801
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||  ||||||||||| |||||| || |||||||||||||| || | ||||| ||| | ||||||||||| ||||||||    
T  14500718 tgaaccgatacaactcgaatacagttcggaactcgactcgataattagttcgttgaacttggttcatgaaccaaacgagccgaa 14500801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 20189101 - 20189018
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||| |||||||| || ||||||||||| || |||||||||| | | | ||| ||| | ||||||||||||||||||||    
T  20189101 tgaaccgaatcaactcgattagagttcgtaatttgattcgataattgattcgtcgaacttggttcatgaaccaaatgagccgaa 20189018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 27196205 - 27196122
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||||| ||||||||  | |||| |||||||||| | | || |||||| | ||||||||||||||| ||||    
T  27196205 tgaaccgaaccaactcgaaaatagttcgagactcgattcgataattgattcgttaaatttggttcatgaaccaaatgagtcgaa 27196122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 41783453 - 41783370
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||  ||||||||||| |||||| || |||||||| ||||| || | ||||| ||| | ||||||||||||||||||||    
T  41783453 tgaaccgatacaactcgaataaagttcggaactcgactcggtaattagttcgttgaacttggttcatgaaccaaatgagccgaa 41783370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 15933291 - 15933251
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcga 228  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  15933291 tgaaccgaaccaactcgagtatagttcgaaattcgactcga 15933251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 29328171 - 29328100
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaacc 259  Q
    |||||||||| ||||||| |||||||||  ||||||||||||| ||  ||| ||||| ||||| ||||||||    
T  29328171 tgaaccgaacaaactcgattatagttcgacattcgactcgatatttaatccgttgaacttgattcatgaacc 29328100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 32945033 - 32945116
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||||| |||||||| || |||| ||| |||||| | | || || ||| | ||||||||||||||| ||||    
T  32945033 tgaaccgaaccaactcgaaaatagttcgaaactcgattcggtaattgattcgttaaacttggttcatgaaccaaatgagtcgaa 32945116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 39407534 - 39407451
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||||||||||| || ||||| ||  |||||| |||||||||| | | ||||| ||||| |||||||| |||||| ||||    
T  39407534 tgaaccgaaccaactcaaaaatagtgcgagattcgattcgataattgattcgttgaacttgattcatgaacctaatgagtcgaa 39407451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 18880320 - 18880278
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgata 230  Q
    |||||||||||||||||| |||||||||  |||||||||||||    
T  18880320 tgaaccgaaccaactcgattatagttcgacattcgactcgata 18880278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 266
Target Start/End: Complemental strand, 26299975 - 26299897
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgag 266  Q
    ||||||||||||||||||| ||||| ||  |||||| |||||||||| | | ||||| || || |||||||| ||||||    
T  26299975 tgaaccgaaccaactcgaaaatagtgcgagattcgattcgataattgattcgttgaacttcattcatgaacctaatgag 26299897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 27906226 - 27906184
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgata 230  Q
    |||||||||||||||||| |||||||||  |||||||||||||    
T  27906226 tgaaccgaaccaactcgattatagttcgacattcgactcgata 27906184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 10328058 - 10327981
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatga 265  Q
    ||||||||||||||||||| || ||||  || |||| ||| |||||| | | ||||| ||||| ||||||||||||||    
T  10328058 tgaaccgaaccaactcgaaaattgttcaaaactcgattcggtaattgattcgttgaacttgattcatgaaccaaatga 10327981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 7448009 - 7447926
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||| ||| | ||||||||||||||||||||    
T  7448009 tgaaccgaaccaactcgaatatagttcataattcgactcgacaattggttcattgaacttggttcatgaaccaaatgagccgaa 7447926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 7445474 - 7445413
Alignment:
Q  270 aaggctcttaatgatatgtacctggagtatgttgataggcttcaggagcatagagaagaagg 331  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  7445474 aaggctcttaatgatatgtacctagagtatgttgataggcttcatgagcatagagaagaagg 7445413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 20401129 - 20401058
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaacc 259  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| | ||||||||    
T  20401129 tgaaccgaaccaactcgaatatagttcgaaattcgactcggtaattagtccattgaatttggttcatgaacc 20401058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 3942309 - 3942232
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatga 265  Q
    |||||||||||||||||| || |||||||||||||| |||| | ||| | ||||||| ||| | ||||||||||||||    
T  3942309 tgaaccgaaccaactcgattaaagttcgtaattcgattcgacagttgattcattgaacttggttcatgaaccaaatga 3942232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 26719948 - 26719865
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||| |||||||||||||| ||||||||  | |||| |||||||||||| ||||| | ||| | ||||||||||||||| ||||    
T  26719948 tgaatcgaaccaactcgaaaatagttcgatactcgattcgataattggttcattggacttggttcatgaaccaaatgagtcgaa 26719865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 33898956 - 33899039
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||||| ||||||||  |||||| |||| |||| || ||||| | ||| | ||||||||||||||| ||||    
T  33898956 tgaaccgaaccaactcgaaaatagttcgatattcgattcgagaattagttcattggacttggttcatgaaccaaatgagtcgaa 33899039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 43053005 - 43052926
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagc 267  Q
    |||||||||||||||||| |||||||||  ||||||||||||| ||  ||| ||||| ||| | |||||||| |||||||    
T  43053005 tgaaccgaaccaactcgattatagttcgacattcgactcgatatttaatccgttgaacttggttcatgaacctaatgagc 43052926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 49034237 - 49034319
Alignment:
Q  189 gaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||| |||||||||| |||||||| ||||||| ||| |||||| | | ||||| ||| | ||||||||||||||| ||||    
T  49034237 gaaccgatccaactcgaaaatagttcgaaattcgattcggtaattgtttcgttgaacttggttcatgaaccaaatgagtcgaa 49034319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 268
Target Start/End: Original strand, 37401578 - 37401658
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagcc 268  Q
    |||||| |||||| |||| || |||||||||||||| |||| ||||| |   ||||| ||||| |||||||||||||||||    
T  37401578 tgaaccaaaccaattcgattagagttcgtaattcgattcgaaaattgatttgttgaacttgattcatgaaccaaatgagcc 37401658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 665859 - 665930
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaacc 259  Q
    |||||||||||||||||| |||||||||  ||||||||||||| ||  ||| || |||||| | ||||||||    
T  665859 tgaaccgaaccaactcgattatagttcgacattcgactcgatatttaatccgttaaatttggttcatgaacc 665930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 5776142 - 5776213
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaacc 259  Q
    |||||||||||||||||| |||||||||  ||||||||||||| ||  ||| ||||| ||| | ||||||||    
T  5776142 tgaaccgaaccaactcgattatagttcgacattcgactcgatatttaatccgttgaacttggttcatgaacc 5776213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 11595808 - 11595891
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||  ||||||||||| |||||| || |||||||| ||||| || | ||||| ||| | ||||||||||| ||||||||    
T  11595808 tgaaccgatacaactcgaataaagttcggaactcgactcggtaattagttcgttgaacttggttcatgaaccaaacgagccgaa 11595891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 18250005 - 18250088
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||||| |||||||   | |||| |||||||||| | | ||||| ||| | ||||||||||||||| ||||    
T  18250005 tgaaccgaaccaactcgaaaatagttcaagactcgattcgataattgattcgttgaacttggttcatgaaccaaatgagtcgaa 18250088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 18740230 - 18740313
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||||| ||||||||  |||||| | ||||||||   |||| || ||| | ||||||||||||||| ||||    
T  18740230 tgaaccgaaccaactcgaaaatagttcgagattcgatttgataattgactcattaaacttggttcatgaaccaaatgagtcgaa 18740313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 21760595 - 21760678
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||||| |||||||| || |||| |||||||||| | | ||||| ||  | || |||||||||||| ||||    
T  21760595 tgaaccgaaccaactcgaaaatagttcgaaactcgattcgataattgattcgttgaactttgttcacgaaccaaatgagtcgaa 21760678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 45055861 - 45055778
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||  ||||||||||| |||||| || |||||||| ||||| || | ||||| ||| | ||||||||||| ||||||||    
T  45055861 tgaaccgatacaactcgaataaagttcggaactcgactcggtaattagttcgttgaacttggttcatgaaccaaacgagccgaa 45055778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 45176378 - 45176299
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagc 267  Q
    |||||||||| ||||||| ||||||| |  ||||||||||||||||  ||| ||||| ||| | ||||||||||| ||||    
T  45176378 tgaaccgaacaaactcgattatagtttgacattcgactcgataattaatccgttgaacttggttcatgaaccaaacgagc 45176299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 36927132 - 36927090
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgata 230  Q
    |||||||||||||||||| |||||||||  |||||||||||||    
T  36927132 tgaaccgaaccaactcgattatagttcgacattcgactcgata 36927090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 327
Target Start/End: Complemental strand, 8112797 - 8112740
Alignment:
Q  270 aaggctcttaatgatatgtacctggagtatgttgataggcttcaggagcatagagaag 327  Q
    ||||||| ||||||||||||| |  |||||| ||||| ||||||||||||| ||||||    
T  8112797 aaggctcataatgatatgtacgtaaagtatgatgatatgcttcaggagcatggagaag 8112740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 39469543 - 39469626
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | |||||| |||||||||||||    
T  39469543 tgaactgaaccaactcgaatatagttcgtaattcgattcgataattggtccattgaacttggttcatgaatcaaatgagccgaa 39469626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 39135480 - 39135399
Alignment:
Q  190 aaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||| ||| | ||||||||||||||||||||    
T  39135480 aaccgaaccaactcgaatatagttcataattcgactcgacaattggttcattgaacttggttcatgaaccaaatgagccgaa 39135399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 46293225 - 46293308
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||| |||||||||||||||||  ||||||||| || |||||||| |||||||||| | ||||||||||||||||||||    
T  46293225 tgaaccgaatcaactcgaatatagttcaaaattcgacttgacaattggtcaattgaatttggttcatgaaccaaatgagccgaa 46293308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 54393455 - 54393538
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||||||||||||| || |||||||||||||| |||| ||||| | | ||||| ||| | ||| ||||||||||||||||    
T  54393455 tgaaccgaaccaactcgattaaagttcgtaattcgattcgacaattgattcgttgaacttggttcataaaccaaatgagccgaa 54393538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 19560786 - 19560831
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataatt 233  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||    
T  19560786 tgaaccgaaccaactcgaatatagttcggaattcgactcgacaatt 19560831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 12710830 - 12710747
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||||| ||||||||  |||||| ||||||||||   | ||||| ||| | ||||||||||||||| ||||    
T  12710830 tgaaccgaaccaactcgaaaatagttcgagattcgattcgataattgactcgttgaacttggttcatgaaccaaatgagtcgaa 12710747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 33438743 - 33438826
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||||||||||||| || |||| ||||||||| |||| ||||| | | ||||| ||| | ||||||||||||||| ||||    
T  33438743 tgaaccgaaccaactcgattaaagtttgtaattcgattcgacaattgattcgttgaacttggttcatgaaccaaatgagtcgaa 33438826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 40943687 - 40943606
Alignment:
Q  190 aaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||| ||||||||  | |||| | |||||||||| ||||| | ||| | ||||||||||||||| ||||    
T  40943687 aaccgaaccaactcgaaaatagttcgatactcgatttgataattggttcattggacttggttcatgaaccaaatgagtcgaa 40943606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 32689297 - 32689255
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgata 230  Q
    |||||||||||||||||| |||||||||  |||||||||||||    
T  32689297 tgaaccgaaccaactcgattatagttcgacattcgactcgata 32689255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 54432189 - 54432243
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattg 242  Q
    ||||||||||||||||||| ||||||||  | |||| |||||||||||| |||||    
T  54432189 tgaaccgaaccaactcgaaaatagttcgatactcgattcgataattggttcattg 54432243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 25253830 - 25253790
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcga 228  Q
    |||||||||||||||||||||||||| | || |||||||||    
T  25253830 tgaaccgaaccaactcgaatatagtttggaactcgactcga 25253790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 30743700 - 30743660
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcga 228  Q
    |||||||||||||||||||||||||||| |  |||||||||    
T  30743700 tgaaccgaaccaactcgaatatagttcggagctcgactcga 30743660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 124493 - 124576
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||| ||| | ||||||||||||||| ||||    
T  124493 tgaaccgaaccaactcgaatatagttcgaaatttgactcgacaattggtccattgaacttggttcatgaaccaaatgagtcgaa 124576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 15014443 - 15014360
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||||||||||||| || |||||||||||||| |||||||||| | | | ||| ||||| ||||||||||||||||||||    
T  15014443 tgaaccgaaccaactcgattagagttcgtaattcgattcgataattgattcgtcgaacttgattcatgaaccaaatgagccgaa 15014360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 25124897 - 25124980
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||||||||||||| || |||||||||||||| | |||||||| | | ||||| ||| | ||||||||||||||||||||    
T  25124897 tgaaccgaaccaactcgattaaagttcgtaattcgatttgataattgattcgttgaacttggttcatgaaccaaatgagccgaa 25124980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 35810846 - 35810763
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||||||||||||| || |||||||||||||| |||| ||||| | | ||||| ||| | ||||||||||||||||||||    
T  35810846 tgaaccgaaccaactcgattaaagttcgtaattcgattcgacaattgattcgttgaacttggttcatgaaccaaatgagccgaa 35810763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 7596521 - 7596438
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||||||||||||| || ||||||||||| || |||||||||| | | | ||| ||| |  |||||||||||||||||||    
T  7596521 tgaaccgaaccaactcgattagagttcgtaatttgattcgataattgattcgtcgaacttggtttatgaaccaaatgagccgaa 7596438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 14578597 - 14578680
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||||||||||||| || |||||||||||||| | || ||||| |   ||||| ||| | ||||||||||||||||||||    
T  14578597 tgaaccgaaccaactcgattagagttcgtaattcgattagacaattgatttgttgaacttggttcatgaaccaaatgagccgaa 14578680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 20347794 - 20347711
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||| ||||||||||||||||   |||| ||||||| ||||  | | ||||||||||| |||| |||||||||||||||    
T  20347794 tgaaccgaatcaactcgaatatagtttaaaatttgactcgacaattaattcgttgaatttgattcatgtaccaaatgagccgaa 20347711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 28006478 - 28006395
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||||| ||||||||  |||||| ||||||||||   | ||||| ||| | ||||||||||||||| ||||    
T  28006478 tgaaccgaaccaactcgaaaatagttcgagattcgattcgataattgactcgttgaacttggttcatgaaccaaatgagtcgaa 28006395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 40159642 - 40159725
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||||| |||||| |  |||||| |||||||||||| ||||| | ||| | |||||| |||||||| ||||    
T  40159642 tgaaccgaaccaactcgaaaatagtttgatattcgattcgataattggttcattggacttggttcatgaatcaaatgagtcgaa 40159725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 42916126 - 42916209
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||| |||| ||  ||||||||||||| |||||||||| | | | ||| ||| | ||||||||||||||||||||    
T  42916126 tgaaccgaaccaattcgattagtgttcgtaattcgattcgataattgattcgtcgaacttggttcatgaaccaaatgagccgaa 42916209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 268
Target Start/End: Complemental strand, 23916938 - 23916858
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagcc 268  Q
    |||||| ||||||||||| || |||||||||||||| |||||||||| | |||  || ||| | ||| |||||||||||||    
T  23916938 tgaaccaaaccaactcgattaaagttcgtaattcgattcgataattgattcatcaaacttggttcattaaccaaatgagcc 23916858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 12224587 - 12224670
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||||  |||||||| ||||||| |||| ||||    | ||||| ||| | ||||||||||||||||||||    
T  12224587 tgaaccgaaccaactcgacaatagttcggaattcgattcgacaattaactcgttgaacttggttcatgaaccaaatgagccgaa 12224670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 15257183 - 15257266
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||||||||||| || |||||| |  | |||| |||||||||||| ||||| | ||| | ||||||||||||||| ||||    
T  15257183 tgaaccgaaccaactcaaaaatagtttgatactcgattcgataattggttcattggacttggttcatgaaccaaatgagtcgaa 15257266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 15306621 - 15306542
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagc 267  Q
    ||||||||||||||| ||  |||||||| || |||| |||||||||  | ||||||| ||| | ||||||||||||||||    
T  15306621 tgaaccgaaccaacttgacaatagttcggaactcgattcgataattaattcattgaacttggttcatgaaccaaatgagc 15306542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 19508656 - 19508573
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||  ||||||||||| |||||| || |||||||| ||||| || | ||||| ||| | ||||||||||| ||||||||    
T  19508656 tgaaccgatacaactcgaataaagttcggaactcgactcggtaattagttcgttgaacttggttcatgaaccaaacgagccgaa 19508573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 20349274 - 20349191
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||||| ||||||   |||| ||||||||||||  | | ||||| ||||| |||  |||||||||||||||    
T  20349274 tgaaccgaaccaactcgaacatagtttaaaatttgactcgataattaattcgttgaacttgattcatataccaaatgagccgaa 20349191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 24469829 - 24469900
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaacc 259  Q
    |||||||||||||||||| |||||||||  ||||||||||||| ||  ||| ||||| ||| | ||||||||    
T  24469829 tgaaccgaaccaactcgattatagttcgacattcgactcgatatttaatccgttgaacttggttcatgaacc 24469900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 29677531 - 29677614
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||||| ||||||||  | |||| | |||||||||| | ||||| ||| | || |||||||||||| ||||    
T  29677531 tgaaccgaaccaactcgaaaatagttcgatactcgatttgataattggttcgttgaacttggttcacgaaccaaatgagtcgaa 29677614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 32179986 - 32179907
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagc 267  Q
    |||||||||||||||||| |||||||||  ||||||||||||| ||  ||| ||||| ||| | ||| |||| |||||||    
T  32179986 tgaaccgaaccaactcgattatagttcgacattcgactcgatatttaatccgttgaacttggttcataaacctaatgagc 32179907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 36419229 - 36419150
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagc 267  Q
    |||||||||||||||||| |||||||||  ||||||||||||| ||  ||| | ||| ||| | |||||||| |||||||    
T  36419229 tgaaccgaaccaactcgattatagttcgacattcgactcgatatttaatccgtcgaacttggttcatgaacctaatgagc 36419150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 46264956 - 46265039
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||| |||| ||  ||||||||||||| |||||||||| | | | ||| ||| | ||||||| ||||||||||||    
T  46264956 tgaaccgaaccaattcgattagtgttcgtaattcgattcgataattgattcgtcgaacttggttcatgaactaaatgagccgaa 46265039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 47602874 - 47602945
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaacc 259  Q
    |||||||||||||||||| |||||||||  ||||||||||||| ||  ||| ||||| ||| | ||||||||    
T  47602874 tgaaccgaaccaactcgattatagttcgacattcgactcgatatttaatccgttgaacttggttcatgaacc 47602945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 47983383 - 47983300
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||||| ||||||||  |||||| |||||||||| |   ||||| ||| | || |||||||||||| ||||    
T  47983383 tgaaccgaaccaactcgaaaatagttcgagattcgattcgataattgatttgttgaacttggttcacgaaccaaatgagtcgaa 47983300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 7702963 - 7702921
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgata 230  Q
    |||||||||||||||||| |||||||||  |||||||||||||    
T  7702963 tgaaccgaaccaactcgattatagttcgacattcgactcgata 7702921  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 266
Target Start/End: Complemental strand, 31816696 - 31816618
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgag 266  Q
    ||||||||||||||||||| |||||||| || || | ||| |||||| | | ||||| ||| | |||||||||||||||    
T  31816696 tgaaccgaaccaactcgaaaatagttcgaaactcaattcggtaattgattcgttgaacttggttcatgaaccaaatgag 31816618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 24576037 - 24575960
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatga 265  Q
    ||||||||||||||||||| ||||||||  ||| || ||||||||||   | ||||| ||| | ||||||||||||||    
T  24576037 tgaaccgaaccaactcgaaaatagttcgagatttgattcgataattgactcgttgaacttggttcatgaaccaaatga 24575960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 5640264 - 5640347
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||||||||||||| || |||||||||||||| |||||||||| | | | ||| ||| | ||||||||||||||||||||    
T  5640264 tgaaccgaaccaactcgattagagttcgtaattcgattcgataattgattcgtcgaacttggttcatgaaccaaatgagccgaa 5640347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 13312152 - 13312067
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaat--tcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||||| ||||||||  ||  |||| |||||||||||| ||||| | ||| | ||||||||||||||| ||||    
T  13312152 tgaaccgaaccaactcgaaaatagttcgatatactcgattcgataattggttcattggacttggttcatgaaccaaatgagtcgaa 13312067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 3081730 - 3081813
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||||||| |||||| ||||||||  | |||| |||||||||||| | ||||| ||| | || |||||||||||| ||||    
T  3081730 tgaaccgaaccagctcgaaaatagttcgatactcgattcgataattggttcgttgaacttggttcacgaaccaaatgagtcgaa 3081813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 8200759 - 8200688
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaacc 259  Q
    |||||| ||||||||||| |||||||||  ||||||||||||| ||  ||| ||||| ||||| ||||||||    
T  8200759 tgaaccaaaccaactcgattatagttcgacattcgactcgatatttaatccgttgaacttgattcatgaacc 8200688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 10961808 - 10961891
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||||||||||||| || |||| |||||| || |||| ||||| | | ||||| ||| | ||||||||||||||| ||||    
T  10961808 tgaaccgaaccaactcgattaaagtttgtaatttgattcgacaattgattcgttgaacttggttcatgaaccaaatgagtcgaa 10961891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 33110586 - 33110503
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||  ||||||||||| |||||| || |||||||| ||||| || | ||||| ||| | ||||||||||| ||||||||    
T  33110586 tgaaccgatacaactcgaataaagttcggaactcgactcggtaattagttcgttgaacttggttcatgaaccaaacgagccgaa 33110503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 33279989 - 33280072
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||||||||||||| || ||||||||||| || |||||||||| | | | ||| ||| | ||||||||||||||||||||    
T  33279989 tgaaccgaaccaactcgattaaagttcgtaatttgattcgataattgattcgtcgaacttggttcatgaaccaaatgagccgaa 33280072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 34516266 - 34516183
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||||||||||| | || |||||||||||| | |||| ||||| | ||||||| ||||| ||| ||||||||||||||||    
T  34516266 tgaaccgaaccaactcaattaaagttcgtaattcaattcgacaattgattcattgaacttgattcatcaaccaaatgagccgaa 34516183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 266
Target Start/End: Complemental strand, 39478178 - 39478100
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgag 266  Q
    ||||||||||||||||||| ||||||||  | |||| |||||||||||| ||||| | ||| | |||||||||||||||    
T  39478178 tgaaccgaaccaactcgaaaatagttcgatactcgattcgataattggttcattggacttggttcatgaaccaaatgag 39478100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 266
Target Start/End: Complemental strand, 43384922 - 43384844
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgag 266  Q
    ||||||||||||||||||| ||||||||  |||||| |||||||||  | | ||||| ||| | |||||||||||||||    
T  43384922 tgaaccgaaccaactcgaaaatagttcgagattcgattcgataattaattcgttgaagttggttcatgaaccaaatgag 43384844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 27189094 - 27189177
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||| |||||||| || ||||||||||| || |||||||||| | | | ||| ||| | ||||||||||||||| ||||    
T  27189094 tgaaccgaatcaactcgattagagttcgtaattagattcgataattgattcgtcgaacttggttcatgaaccaaatgagtcgaa 27189177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 453611 - 453569
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgata 230  Q
    |||||||||||||||||| |||||||||  |||||||||||||    
T  453611 tgaaccgaaccaactcgattatagttcgacattcgactcgata 453569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 30713284 - 30713201
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||||||||||||| ||  ||||||||||||| |||||||||| | | | ||| ||| | ||||||||||||||||||||    
T  30713284 tgaaccgaaccaactcgattagtgttcgtaattcgattcgataattgattcgtcgaacttggttcatgaaccaaatgagccgaa 30713201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 11028036 - 11027953
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||||||||||| | || |||||||||||| | |||||||||| | | | ||| ||| | ||||||||||||||||||||    
T  11028036 tgaaccgaaccaactcaattagagttcgtaattcaattcgataattgattcgtcgaacttggttcatgaaccaaatgagccgaa 11027953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 266
Target Start/End: Original strand, 20203728 - 20203804
Alignment:
Q  190 aaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgag 266  Q
    |||||||||||||||| || |||||||||||||| || | ||||| | | ||||| ||| | |||||||||||||||    
T  20203728 aaccgaaccaactcgattaaagttcgtaattcgattcaacaattgattcgttgaacttggttcatgaaccaaatgag 20203804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 17616395 - 17616312
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||| |||||||||||||| |||||| | || |||| |||| ||||    | ||||||||||| ||||||||||||||||||||    
T  17616395 tgaatcgaaccaactcgaaaatagttagaaactcgattcgacaattatctcgttgaatttgatacatgaaccaaatgagccgaa 17616312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 27464584 - 27464667
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||||| ||||||||  | | || |||||||||| |   ||||||||| | ||||||||||||||| ||||    
T  27464584 tgaaccgaaccaactcgaaaatagttcgagacttgattcgataattgatttgttgaatttggttcatgaaccaaatgagtcgaa 27464667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 33831623 - 33831552
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaacc 259  Q
    |||||||||||||||||| |||||||||  |||||||||||||  |  ||| ||||||||| | ||||||||    
T  33831623 tgaaccgaaccaactcgattatagttcgacattcgactcgatatctaatccgttgaatttggttcatgaacc 33831552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 27634799 - 27634757
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgata 230  Q
    |||||||||||||||||| |||||||||  |||||||||||||    
T  27634799 tgaaccgaaccaactcgattatagttcgacattcgactcgata 27634757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 271
Target Start/End: Original strand, 27902449 - 27902534
Alignment:
Q  186 attgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    |||||||||||||||||||| || ||||||||| |||| |||| ||||| | | | ||| ||| | ||||||| |||||| |||||    
T  27902449 attgaaccgaaccaactcgattaaagttcgtaaatcgattcgacaattgattcgtcgaacttggttcatgaacaaaatgaaccgaa 27902534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 10117 - 10034
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||| ||||||||||||||||   |||| ||||||| ||||  | | ||||||||||| |||| |||||||||||||||    
T  10117 tgaaccgaatcaactcgaatatagtttaaaatttgactcgacaattaattcgttgaatttgattcatgtaccaaatgagccgaa 10034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 11597 - 11514
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||||||||| ||||||   |||| ||||||||||||  | | ||||| ||||| |||  |||||||||||||||    
T  11597 tgaaccgaaccaactcgaacatagtttaaaatttgactcgataattaattcgttgaacttgattcatataccaaatgagccgaa 11514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 7320 - 7403
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatgagccgaa 271  Q
    ||||||||||||| |||| ||  ||||||||||||| |||||||||| | | | ||| ||| | ||||||||||||||||||||    
T  7320 tgaaccgaaccaattcgattagtgttcgtaattcgattcgataattgattcgtcgaacttggttcatgaaccaaatgagccgaa 7403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 14554 - 14477
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaatga 265  Q
    |||||||||||||| |||| |||||||| || |||| ||| |||||| | ||||||| ||| | ||||||||||||||    
T  14554 tgaaccgaaccaacccgaaaatagttcgaaactcgattcggtaattgattcattgaacttggttcatgaaccaaatga 14477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 19424 - 19382
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgata 230  Q
    |||||||||||||||||| |||||||||  |||||||||||||    
T  19424 tgaaccgaaccaactcgattatagttcgacattcgactcgata 19382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 262
Target Start/End: Complemental strand, 21215 - 21141
Alignment:
Q  188 tgaaccgaaccaactcgaatatagttcgtaattcgactcgataattggtccattgaatttgatccatgaaccaaa 262  Q
    ||||||||||||||||||| ||||||||  | |||| |||||||||| | | ||||| ||| | |||||||||||    
T  21215 tgaaccgaaccaactcgaaaatagttcgagactcgattcgataattgattcgttgaacttggttcatgaaccaaa 21141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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