View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11577_low_2 (Length: 612)

Name: NF11577_low_2
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11577_low_2
NF11577_low_2
[»] chr5 (2 HSPs)
chr5 (7-256)||(16446140-16446390)
chr5 (435-594)||(16446401-16446557)
[»] chr1 (3 HSPs)
chr1 (257-356)||(17311204-17311303)
chr1 (473-594)||(17311393-17311511)
chr1 (266-328)||(13932772-13932834)
[»] scaffold0603 (2 HSPs)
scaffold0603 (238-344)||(5402-5508)
scaffold0603 (479-531)||(5212-5264)
[»] chr3 (11 HSPs)
chr3 (189-315)||(4080813-4080939)
chr3 (473-584)||(5965467-5965575)
chr3 (238-342)||(4129317-4129421)
chr3 (266-317)||(4115678-4115729)
chr3 (473-584)||(11497931-11498039)
chr3 (245-317)||(4092934-4093006)
chr3 (473-516)||(3913887-3913930)
chr3 (245-308)||(4141025-4141088)
chr3 (219-334)||(5965192-5965307)
chr3 (473-528)||(2919173-2919228)
chr3 (473-516)||(4092711-4092754)
[»] scaffold1301 (1 HSPs)
scaffold1301 (473-536)||(83-146)
[»] chr8 (1 HSPs)
chr8 (480-531)||(18387610-18387661)
[»] chr4 (1 HSPs)
chr4 (477-528)||(5988103-5988154)


Alignment Details
Target: chr5 (Bit Score: 171; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 7 - 256
Target Start/End: Original strand, 16446140 - 16446390
Alignment:
Q  7 ggagcacagagcttgacgattcactcttgacaaagctgaagaaaacactgatgactcttgaatatgtactttatattgacgagaataaagggttcaccac 106  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16446140 ggagcacaaagcttgacgattcactcttgacaaagctgaagaaaacactgatgactattgaatatgtactttatattgacgagaataaagggttcaccac 16446239  T
Q  107 ttgttcnnnnnnnnnnnnngggctcaccactttatttattgaggggaaagggatcatcacccgttc-nnnnnnntaaataaagagatcaccaatcctact 205  Q
    ||||||             |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  16446240 ttgttcaaaaaagaaaaaagggctcaccactttatttattgaggggaaagggatcatcacccgttcaaaaaaaataaataaagagatcaccaatcctact 16446339  T
Q  206 ttcaaccaacggttggatatgctaagatgtgttgtcttagaagttgaaaat 256  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16446340 ttcaaccaacggttggatatgctgagatgtgttgtcttagaagttgaaaat 16446390  T

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Target: chr5; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 435 - 594
Target Start/End: Original strand, 16446401 - 16446557
Alignment:
Q  435 aagagctaggtgaatcttctgcacgttctgctcgtgtagatgaatcttctatttatggaagagatgatgatagaaagaaacttaaacatcttttattatc 534  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16446401 aagagctaggtgaatcttctgcacgttctgctcgggtagatgaatcttctatttatggaagagatgatgatagaaagaaacttaaacatcttttattatc 16446500  T
Q  535 tactggttttgataatagtaaaaaagtaggaattatttccattgtgggtacgggagggat 594  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||| |||||||||    
T  16446501 tactggttttgataatagt---aaagtaggaattatttccattgtgggtatgggagggat 16446557  T

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Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 257 - 356
Target Start/End: Original strand, 17311204 - 17311303
Alignment:
Q  257 ttattcgaagaaatcaacactgaggcattgcggtgcaaagtggaagcagagtatgaaaccccaactccttcttctcaggttctgaataataattcttctc 356  Q
    ||||| || ||||||||||||||||||||||| ||||||||||| |||| | ||||||| | ||| ||| ||||||||||| ||||||||  ||||||||    
T  17311204 ttatttgacgaaatcaacactgaggcattgcgttgcaaagtggatgcagcgaatgaaacactaacacctacttctcaggttatgaataatttttcttctc 17311303  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 473 - 594
Target Start/End: Original strand, 17311393 - 17311511
Alignment:
Q  473 gatgaatcttctatttatggaagagatgatgatagaaagaaacttaaacatcttttattatctactggttttgataatagtaaaaaagtaggaattattt 572  Q
    |||||||||| |||||||||||||||  ||||||  || |||||||| |||||||| || | || || ||||||| ||||| |||   || || ||||||    
T  17311393 gatgaatcttgtatttatggaagagagaatgatatgaacaaacttaaccatcttttgttgtttagtgattttgatgatagtcaaa---taagagttattt 17311489  T
Q  573 ccattgtgggtacgggagggat 594  Q
    |||||||||||| |||||||||    
T  17311490 ccattgtgggtatgggagggat 17311511  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 328
Target Start/End: Original strand, 13932772 - 13932834
Alignment:
Q  266 gaaatcaacactgaggcattgcggtgcaaagtggaagcagagtatgaaaccccaactccttct 328  Q
    ||||||||||| ||||| |||||| ||||||||||||  ||| ||||||||| |||| |||||    
T  13932772 gaaatcaacaccgaggctttgcggcgcaaagtggaaggtgaggatgaaacccaaactgcttct 13932834  T

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Target: scaffold0603 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 238 - 344
Target Start/End: Complemental strand, 5508 - 5402
Alignment:
Q  238 tgtcttagaagttgaaaatttattcgaagaaatcaacactgaggcattgcggtgcaaagtggaagcagagtatgaaaccccaactccttcttctcaggtt 337  Q
    |||||| |||||| | ||||| || || |||||||||  |||||||||||  | |||||||||| ||||||||||||||||||||||| |||||| |||     
T  5508 tgtctttgaagttcacaatttgtttgacgaaatcaaccgtgaggcattgcacttcaaagtggaatcagagtatgaaaccccaactcctccttctccggtg 5409  T
Q  338 ctgaata 344  Q
    |||||||    
T  5408 ctgaata 5402  T

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Target: scaffold0603; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 531
Target Start/End: Complemental strand, 5264 - 5212
Alignment:
Q  479 tcttctatttatggaagagatgatgatagaaagaaacttaaacatcttttatt 531  Q
    ||||||||||||||||||||  ||||||  ||| |||||||||||||||||||    
T  5264 tcttctatttatggaagagacaatgatattaaggaacttaaacatcttttatt 5212  T

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Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 189 - 315
Target Start/End: Complemental strand, 4080939 - 4080813
Alignment:
Q  189 agatcaccaatcctactttcaaccaacggttggatatgctaagatgtgttgtcttagaagttgaaaatttattcgaagaaatcaacactgaggcattgcg 288  Q
    |||||||||| ||| || |||| ||| || ||||| ||||  ||  || |||||| |||| ||| ||||| || || |||||||||||||||||||||||    
T  4080939 agatcaccaaccctgctgtcaagcaatggctggatttgctgcgagatgctgtctttgaagctgataatttgttagacgaaatcaacactgaggcattgcg 4080840  T
Q  289 gtgcaaagtggaagcagagtatgaaac 315  Q
    ||||||||||||||| | |||||||||    
T  4080839 gtgcaaagtggaagccgggtatgaaac 4080813  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 473 - 584
Target Start/End: Original strand, 5965467 - 5965575
Alignment:
Q  473 gatgaatcttctatttatggaagagatgatgatagaaagaaacttaaacatcttttattatctactggttttgataatagtaaaaaagtaggaattattt 572  Q
    |||||||||| |||||||||||||||  |||||| ||||||||||||||||||||| || |||| ||    |||| || ||||||   ||||||||||||    
T  5965467 gatgaatcttgtatttatggaagagacaatgatataaagaaacttaaacatcttttgttgtctagtgacggtgatgatggtaaaa---taggaattattt 5965563  T
Q  573 ccattgtgggta 584  Q
    ||||||||||||    
T  5965564 ccattgtgggta 5965575  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 238 - 342
Target Start/End: Original strand, 4129317 - 4129421
Alignment:
Q  238 tgtcttagaagttgaaaatttattcgaagaaatcaacactgaggcattgcggtgcaaagtggaagcagagtatgaaaccccaactccttcttctcaggtt 337  Q
    |||||| |||| |||  ||||||| || ||||||||||| |||||||||||||  ||||| ||||| ||||||||||||| |||| || || |||||||     
T  4129317 tgtctttgaagctgacgatttatttgacgaaatcaacacggaggcattgcggtcaaaagttgaagctgagtatgaaacccgaactgctactgctcaggtg 4129416  T
Q  338 ctgaa 342  Q
    |||||    
T  4129417 ctgaa 4129421  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 317
Target Start/End: Complemental strand, 4115729 - 4115678
Alignment:
Q  266 gaaatcaacactgaggcattgcggtgcaaagtggaagcagagtatgaaaccc 317  Q
    ||||||||||||||| |||||||||| ||||||||||| |||||||||||||    
T  4115729 gaaatcaacactgagtcattgcggtgtaaagtggaagctgagtatgaaaccc 4115678  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 473 - 584
Target Start/End: Complemental strand, 11498039 - 11497931
Alignment:
Q  473 gatgaatcttctatttatggaagagatgatgatagaaagaaacttaaacatcttttattatctactggttttgataatagtaaaaaagtaggaattattt 572  Q
    ||||||||||||||||||||||||||   ||||| | ||||||||||||||||||| || |||| || || |||| ||||| |||   || |||||||||    
T  11498039 gatgaatcttctatttatggaagagacagtgataaagagaaacttaaacatcttttgttgtctagtgattgtgatgatagtcaaa---tacgaattattt 11497943  T
Q  573 ccattgtgggta 584  Q
    | || |||||||    
T  11497942 caatcgtgggta 11497931  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 4093006 - 4092934
Alignment:
Q  245 gaagttgaaaatttattcgaagaaatcaacactgaggcattgcggtgcaaagtggaagcagagtatgaaaccc 317  Q
    |||| |||| |||| || || ||||| ||||||||| |||||||||||| ||||||||| |||||||||||||    
T  4093006 gaagctgaagatttgtttgacgaaattaacactgagtcattgcggtgcagagtggaagctgagtatgaaaccc 4092934  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 473 - 516
Target Start/End: Complemental strand, 3913930 - 3913887
Alignment:
Q  473 gatgaatcttctatttatggaagagatgatgatagaaagaaact 516  Q
    ||||||||| |||||||||| |||||||||||||||||||||||    
T  3913930 gatgaatctgctatttatggtagagatgatgatagaaagaaact 3913887  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 4141025 - 4141088
Alignment:
Q  245 gaagttgaaaatttattcgaagaaatcaacactgaggcattgcggtgcaaagtggaagcagagt 308  Q
    |||| ||| ||||| || || ||||||||||||||||||||||||||||||||| |||| ||||    
T  4141025 gaagctgacaatttgtttgacgaaatcaacactgaggcattgcggtgcaaagtgaaagccgagt 4141088  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 219 - 334
Target Start/End: Original strand, 5965192 - 5965307
Alignment:
Q  219 tggatatgctaagatgtgttgtcttagaagttgaaaatttattcgaagaaatcaacactgaggcattgcggtgcaaagtggaagcagagtatgaaacccc 318  Q
    |||||||| | ||| ||| |||||| |||||||   |||| || || ||||||||| || || ||||||  ||||||||||||||||||||| ||||||     
T  5965192 tggatatgttgagaagtgctgtctttgaagttggctatttgttggaggaaatcaaccctcagacattgccttgcaaagtggaagcagagtatcaaaccct 5965291  T
Q  319 aactccttcttctcag 334  Q
    |||| || ||||||||    
T  5965292 aactactccttctcag 5965307  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 528
Target Start/End: Original strand, 2919173 - 2919228
Alignment:
Q  473 gatgaatcttctatttatggaagagatgatgatagaaagaaacttaaacatctttt 528  Q
    |||||||||| ||||||||| ||||||  ||||| ||| |||||||||||||||||    
T  2919173 gatgaatcttgtatttatggtagagatagtgataaaaacaaacttaaacatctttt 2919228  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 516
Target Start/End: Complemental strand, 4092754 - 4092711
Alignment:
Q  473 gatgaatcttctatttatggaagagatgatgatagaaagaaact 516  Q
    ||||||||| |||||||||| ||||||||||| |||||||||||    
T  4092754 gatgaatctgctatttatggcagagatgatgacagaaagaaact 4092711  T

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Target: scaffold1301 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 473 - 536
Target Start/End: Complemental strand, 146 - 83
Alignment:
Q  473 gatgaatcttctatttatggaagagatgatgatagaaagaaacttaaacatcttttattatcta 536  Q
    |||||||||| |||||||||||||||  |||||| ||| |||||||||||||||||||| ||||    
T  146 gatgaatcttgtatttatggaagagacaatgatataaacaaacttaaacatcttttattgtcta 83  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 480 - 531
Target Start/End: Original strand, 18387610 - 18387661
Alignment:
Q  480 cttctatttatggaagagatgatgatagaaagaaacttaaacatcttttatt 531  Q
    |||||||||||||||||||  |||||| ||| ||||||||||||||||||||    
T  18387610 cttctatttatggaagagacaatgatataaacaaacttaaacatcttttatt 18387661  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 477 - 528
Target Start/End: Original strand, 5988103 - 5988154
Alignment:
Q  477 aatcttctatttatggaagagatgatgatagaaagaaacttaaacatctttt 528  Q
    ||||||||||||||||||||||  |||||| ||||||||||||| |||||||    
T  5988103 aatcttctatttatggaagagacaatgatataaagaaacttaaaaatctttt 5988154  T

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