View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11577_low_20 (Length: 339)
Name: NF11577_low_20
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11577_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 1835445 - 1835143
Alignment:
| Q |
19 |
tcaacggtggctaaaaggaatttatcggaccatctaacttagttttatggtttatgtgattttatgaaaaatgttcgtttaacttttactattatttgac |
118 |
Q |
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| T |
1835445 |
tcaacggcggctaaaaggaatttatcggaccatctaacttagttttatggtttatgtgattttatgaaaaatgttcgtttagcttttactattatttgac |
1835346 |
T |
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| Q |
119 |
attcagttgtgtgtgtaatttaaaaagagacaaatagacgcatctttcagcataagaaggaacaacttcatttctta-gaaaaaaggttaaactgcatgc |
217 |
Q |
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| T |
1835345 |
attcagttgtgtgtgtaatttgaaaagagagaaatagacgcatctttcagcataaggaggaacaacttcattccttaggaaaaaaggttaagctacatgc |
1835246 |
T |
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| Q |
218 |
attttaattgtttaaatcaaaatatattatgttcgattttgactacaacctcttgaggcttaatcctaatccttgcctaactggtctaacttagcttatc |
317 |
Q |
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| T |
1835245 |
attttgatggtttaaatcaaaatatattatattcgattttgactacaacctcttgaggcttaatcctaatctttgcctaactgttctaacttagtttatc |
1835146 |
T |
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| Q |
318 |
tct |
320 |
Q |
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||| |
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| T |
1835145 |
tct |
1835143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 9260502 - 9260432
Alignment:
| Q |
248 |
gttcgattttgactacaacctcttgaggcttaatcctaatccttgcctaactggtctaacttagcttatct |
318 |
Q |
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| T |
9260502 |
gttcgattttgactacaacgtttggaggcttaatctcattccttgcctaagtgttgtaacttggcttatct |
9260432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 264
Target Start/End: Complemental strand, 2856771 - 2856615
Alignment:
| Q |
109 |
attatttgacattcagttgtgtgtgtaatttaaaaagagacaaatagacgcatctttcagcataagaaggaacaacttcatttctt--agaaaaaaggtt |
206 |
Q |
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| T |
2856771 |
attatatgactttcagttgcgtgagtaatttagaaagagagaaataaacacatatttcagcataaggagaaaaatatt-atttctttaagcgaaaacgtt |
2856673 |
T |
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| Q |
207 |
aaactgcatgcattttaattgtttaaatcaaaatatattatgttcgattttgactaca |
264 |
Q |
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| T |
2856672 |
aagtttcatgcattctaatggtttaaatcgacatatatgatgttcgattttgactaca |
2856615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 316
Target Start/End: Original strand, 27000529 - 27000575
Alignment:
| Q |
270 |
ttgaggcttaatcctaatccttgcctaactggtctaacttagcttat |
316 |
Q |
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| T |
27000529 |
ttgaggcttaatcatattcattgcctaactgttctaacttagcttat |
27000575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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