View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11577_low_22 (Length: 328)
Name: NF11577_low_22
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11577_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 34624563 - 34624862
Alignment:
| Q |
18 |
aatctaaatgcagtttacaaaataatgggaaacctaatttgtttaggatcaatgatgatgttacgatatgtggtttgaaggattgattatatcaaatgaa |
117 |
Q |
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| T |
34624563 |
aatctaaatgcagtttacaaaataatgggaaacctaatttgtttaggatcaatgatgatgttacgatatgtggtttgaaggattgattataccaaatgaa |
34624662 |
T |
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| Q |
118 |
tgatattctcatctacagtgatacaaaaagggcagtctgtgatgagtatcattttttgtcaatcgactcatatgggcgtgttaggttcacaaagatgaaa |
217 |
Q |
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| T |
34624663 |
tggtattctcatctacggtgatacaaaaagggtagtctgtgatgagtatcattttttgtcaatcgactcatatgggcgtgttaggttcacaaagatgaaa |
34624762 |
T |
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| Q |
218 |
cttcaaaacaataacgatatgaaaactatgttctatacatttgcttagtatagtttcaagggaccgatcaatttagaaaccatcttggtgagatatgttc |
317 |
Q |
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| T |
34624763 |
cttcaaaacaataacgatatgaaaactatgttctatacatttgcttagtatagtttcaagggaccgatcaatttagaaaccatcttggtgagatatgttc |
34624862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 34554105 - 34554045
Alignment:
| Q |
212 |
atgaaacttcaaaacaataacgatatgaaaactatgttctatacatttgcttagtatagtt |
272 |
Q |
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| T |
34554105 |
atgaaacttcaaaacaacaacgatgtgaaaactatgttatctatatttgttgagtatagtt |
34554045 |
T |
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