View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11577_low_23 (Length: 328)
Name: NF11577_low_23
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11577_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 9570070 - 9569754
Alignment:
| Q |
1 |
tctttcttaatttgatagcctatgtctcccacttaactgatta----ggctggtagttataaataatgagaatggaaaaatgtctccaagattggttggt |
96 |
Q |
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| T |
9570070 |
tctttcttaatttgatagccaatgtctcccacttaactgattaattaggctggtagttataaataatgagaatggaaaaatgtctccaagattgggtggt |
9569971 |
T |
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| Q |
97 |
tgtgatggataacgtggaaaggcacaaagaccttttctttgtgactcaattagttggaagtttgtaaatgcaagggtctaaggtagatatctgtatggag |
196 |
Q |
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| T |
9569970 |
tgtgatggataacgtggaaaggcacaaagaccttttctttgtgactcaattagttggaagtttgtaaatgcaagggtctaaggtagatatctgtatggag |
9569871 |
T |
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| Q |
197 |
aaaaacaattagatagatacaaagcaacaagtaggtcttacttaatctactttcttttgatattgatgaaaggnnnnnnnnnnttgaacggaaaaattta |
296 |
Q |
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| T |
9569870 |
aaaaacaattagatagatacaaagcaacaagtaggtcttgcttaatctactttcttttgatattgatgaaagaaaaaaaaaaattgaacggaaaaattta |
9569771 |
T |
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| Q |
297 |
ttaataacgtagtctct |
313 |
Q |
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|||||||| |||||||| |
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| T |
9569770 |
ttaataacatagtctct |
9569754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 9773008 - 9772933
Alignment:
| Q |
143 |
caattagttggaagtttgtaaatgcaagggtctaaggtagatatctgtatggagaaaaacaattagatagatacaa |
218 |
Q |
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|||| ||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
9773008 |
caatgagttggaagttggtatatgcaagggtctaagatagatgtctgtatggagaaaaacaattagatagatacaa |
9772933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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