View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11577_low_25 (Length: 308)

Name: NF11577_low_25
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11577_low_25
NF11577_low_25
[»] chr2 (1 HSPs)
chr2 (1-292)||(18079213-18079504)


Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 18079504 - 18079213
Alignment:
Q  1 ttggcgtaacaacagttccacttccatcttgaacatcccttggacaaccaactgcaaccttcttcatttgagtcttttcttcaccaaaggttgcatcttt 100  Q
    |||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18079504 ttggagtaacaacagttccacttccatcatgaacatcccttggagaaccaactgcaaccttcttcatttgagtcttttcttcaccaaaggttgcatcttt 18079405  T
Q  101 tggaaatggtggctcaaccattcttgactttggctttgaaaattcagacctagccaagaaagtgcttgttgtaggaacttgaacattgcttcttctgaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18079404 tggaaatggtggctcaaccattcttgactttggctttgaaaattcagacctagccaagaaagtgcttgttgtaggaacttgaacattgcttcttctgaga 18079305  T
Q  201 ttctcaagctccatgagttctgcttctgcatgtgacccttttggagacggagatgaacccatcttggaaatgagctgaggagagtaggaact 292  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||    
T  18079304 ttctcaagctccatgagttctgcttctgcatgtgatccttttggagatggagatgaacccgtcttggaaatgaactgaggagagtaggaact 18079213  T

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