View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11577_low_26 (Length: 299)
Name: NF11577_low_26
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11577_low_26 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 29)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 4507314 - 4507020
Alignment:
| Q |
1 |
cctttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagacttgaaatctattcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4507314 |
cctttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagacttgaaatctattcg |
4507215 |
T |
|
| Q |
101 |
tgaatcgattagaaataaattcatttacccttttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgctta |
200 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
4507214 |
tgaatcgattagaaagaaatttatttacccttttcgcgaacttctagctagacttgatgactctgcgaaatctggtcttgtgcctcctgttacttgctta |
4507115 |
T |
|
| Q |
201 |
gtttctgattgtctattgtcatttaccataaaagttgccgaagaacttgcacttccaattgttctccttgtcccatttagtgcttgttctttcat |
295 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4507114 |
gtttctgattgtctcttgtcatttaccataagagttgctgaagaatttgcacttccaattgttctccttgtcccatttagtgcttgttctttcat |
4507020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 3 - 293
Target Start/End: Original strand, 4513706 - 4513999
Alignment:
| Q |
3 |
tttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtg---atgttaatccagacttgaaatctattc |
99 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| | || ||||||||||||||||||||||| ||||||| ||| || || |||||||| |||| ||| |
|
|
| T |
4513706 |
tttgatggtttcaccgattttcgctttgagactattcctgatggtttaactccaatggatggcgatggtggtgatgctactcaagacttgatatctcttc |
4513805 |
T |
|
| Q |
100 |
gtgaatcgattagaaataaattcatttacccttttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgctt |
199 |
Q |
| |
|
| ||||| || ||||| || | ||| | ||||||||||||||| |||||| |||| |||| ||||||||| | |||||| | ||| |||||||||||| |
|
|
| T |
4513806 |
gcgaatcaatcagaaagaattgcatcgaaccttttcgcgaacttttagctaaacttaatgactctgcaaaagccggtcttataccttttgttacttgctt |
4513905 |
T |
|
| Q |
200 |
agtttctgattgtctattgtcatttaccataaaagttgccgaagaacttgcacttccaattgttctccttgtcccatttagtgcttgttctttc |
293 |
Q |
| |
|
||||||||||||| | || ||||||| | | ||||||| |||||||||||||| ||||| || || || |||| | ||||||||||||||| |
|
|
| T |
4513906 |
agtttctgattgtattatgccatttactacacaagttgctgaagaacttgcactcccaatagtgatctttttcccgtcaagtgcttgttctttc |
4513999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 4558528 - 4558320
Alignment:
| Q |
1 |
cctttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagacttgaaatctattcg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | || |||||||||||||||| |||||||||||| ||||||| || |||| | | || || | |
|
|
| T |
4558528 |
cctttgatggtttcactgattttagctttgagactattccggatggtttaactccaacggatggtgatggcgatgttagtcaagacatttacgctctttg |
4558429 |
T |
|
| Q |
101 |
tgaatcgattagaaataaattcatttacccttttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgctta |
200 |
Q |
| |
|
| |||| || ||||| || ||| | | ||||| ||||||||||| |||||||| |||| ||||||| |||||||||||| ||||| ||||||||| || |
|
|
| T |
4558428 |
taaatcaatcagaaagaacttcctacaacctttccgcgaacttcttgctagactaaatgactctgcaacatctggtcttgtccctccagttacttgcata |
4558329 |
T |
|
| Q |
201 |
gtttctgat |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
4558328 |
gtttctgat |
4558320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 4587035 - 4586827
Alignment:
| Q |
1 |
cctttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagacttgaaatctattcg |
100 |
Q |
| |
|
||||||||| ||| |||||||||| |||||||||| | ||||||||||||||||||| |||||||||||||||||||| || |||| | | || || | |
|
|
| T |
4587035 |
cctttgatgatttaactgattttagctttgagactattccagatggtttaactccaacggatggtgatggtgatgttagtcaagacatttacgctctttg |
4586936 |
T |
|
| Q |
101 |
tgaatcgattagaaataaattcatttacccttttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgctta |
200 |
Q |
| |
|
| |||| || ||||| || ||| | | ||||| ||||||||||| ||||||||| |||| ||||||| |||||||||| | ||||| || ||||| || |
|
|
| T |
4586935 |
taaatcaatcagaaagaacttcctacaacctttccgcgaacttcttgctagacttaatgactctgcaacatctggtcttatccctccagtcacttgtata |
4586836 |
T |
|
| Q |
201 |
gtttctgat |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
4586835 |
gtttctgat |
4586827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 3173406 - 3173319
Alignment:
| Q |
1 |
cctttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagactt |
88 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||| || |||||| |
|
|
| T |
3173406 |
cctttgatggtttcaatgattttaactttgagactataccagatggtttaacttcaatggaaggtgatggtgatgttagtcaagactt |
3173319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 4562065 - 4561992
Alignment:
| Q |
1 |
cctttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgat |
74 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4562065 |
cctttgatggtttcactgactttaactttgagactataccagatggtttaactccaaaggatggtgatggtgat |
4561992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 4575858 - 4575783
Alignment:
| Q |
1 |
cctttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgt |
76 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
4575858 |
cctttgatggtttcactgactttaactttgagactataccagatggtttaactccaaaggatggtaatggtgatgt |
4575783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 4581415 - 4581209
Alignment:
| Q |
3 |
tttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagacttgaaatctattcgtg |
102 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| | ||||||||||||||||| || || || ||| |||||||||||| |||| | | || | ||| |
|
|
| T |
4581415 |
tttgatggtttcaccgattttacctttgagactattccagatggtttaactccgatagaaggcgatagtgatgttaatcaagacatatatgctctatgtg |
4581316 |
T |
|
| Q |
103 |
aatcgattagaaataaattcatttacccttttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgcttagt |
202 |
Q |
| |
|
|||| || ||||| || ||| | | |||||| | |||||||| ||||||||| |||| ||||| | ||||||||||| ||||| ||||||||| |||| |
|
|
| T |
4581315 |
aatcaatcagaaagaacttcctacaacctttttgtgaacttcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagt |
4581216 |
T |
|
| Q |
203 |
ttctgat |
209 |
Q |
| |
|
||||||| |
|
|
| T |
4581215 |
ttctgat |
4581209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 4483576 - 4483653
Alignment:
| Q |
60 |
gatggtgatggtgatgttaatccagacttgaaatctattcgtgaatcgattagaaataaattcatttacccttttcgc |
137 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4483576 |
gatggtgatggtgatattaatccagacttgcaatctcgtcgtgaatcgattagaaataaattcatttacacttttcgc |
4483653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 4627553 - 4627288
Alignment:
| Q |
1 |
cctttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagacttgaaatctattcg |
100 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| |||||||||||||||| ||| | || |||||||| ||||||| || |||| | |||| || |
|
|
| T |
4627553 |
cctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccatctctttc |
4627454 |
T |
|
| Q |
101 |
tgaatcgattagaaataaattcatttacccttttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgctta |
200 |
Q |
| |
|
|||| || ||||| || ||| || | || ||| | |||||||| |||| |||| |||| || || | ||||||||||| | || |||||||||||| |
|
|
| T |
4627453 |
ccaatcaataagaaagaacttccttcagccctttggtgaacttcttgctaaacttcatgactcagccactgctggtcttgttgcaccagttacttgctta |
4627354 |
T |
|
| Q |
201 |
gtttctgattgtctattgtcatttaccataaaagttgccgaagaacttgcacttccaattgttctc |
266 |
Q |
| |
|
||||| |||||| || |||||||||||||| ||| ||| ||||||| |||||| ||||||| |||| |
|
|
| T |
4627353 |
gtttcagattgtttaatgtcatttaccatacaagctgctgaagaacatgcactcccaattgctctc |
4627288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 266
Target Start/End: Complemental strand, 4599560 - 4599302
Alignment:
| Q |
7 |
atggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagacttgaaatctattcgtgaatc |
106 |
Q |
| |
|
||||||||||||||||| ||| |||||| | |||||||||||||||||||| ||||||||||||||||||| | ||| | || ||| | || |||| |
|
|
| T |
4599560 |
atggtttcactgatttttccttcgagactattccagatggtttaactccaatagatggtgatggtgatgttacacaggacataaattctctctgtaaatc |
4599461 |
T |
|
| Q |
107 |
gattagaaataaattcatttacccttttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgcttagtttct |
206 |
Q |
| |
|
|| |||||||| ||| | | || |||||||||||||| |||||||| |||| ||| | | |||||||| | ||||| ||||||||||||| || | |
|
|
| T |
4599460 |
aatcagaaataacttcctccaaccatttcgcgaacttcttgctagactctatgagtcttctactgctggtcttatccctccagttacttgcttag-ttat |
4599362 |
T |
|
| Q |
207 |
gattgtctattgtcatttaccataaaagttgccgaagaacttgcacttccaattgttctc |
266 |
Q |
| |
|
||||| |||| ||||| ||| ||||||| ||||||||| ||||||| ||||||||| |
|
|
| T |
4599361 |
gattggaacatgtcctttactatacaagttgctgaagaactttcacttcctattgttctc |
4599302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 4572369 - 4572161
Alignment:
| Q |
1 |
cctttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagacttgaaatctattcg |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| | | |||||||||||| |||||| |||||| ||||| ||||||| || |||| | | || || | |
|
|
| T |
4572369 |
cctttgatggtttcaccaattttaactttgagagtattccagatggtttatctccaacggatggcgatggcgatgttagtcaagacatttacgctctttg |
4572270 |
T |
|
| Q |
101 |
tgaatcgattagaaataaattcatttacccttttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgctta |
200 |
Q |
| |
|
| |||| || || || || || | | ||||| ||||||||||| ||||||||| |||| ||||||| |||||||||||| | ||| |||| |||| || |
|
|
| T |
4572269 |
taaatcaatcaggaagaattttctacaacctttccgcgaacttcttgctagacttaatgactctgcaacatctggtcttgtccgtccagttagttgcata |
4572170 |
T |
|
| Q |
201 |
gtttctgat |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
4572169 |
gtttctgat |
4572161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 4503018 - 4503105
Alignment:
| Q |
1 |
cctttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagactt |
88 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| |||| |||||||||||||||| || |||||| |
|
|
| T |
4503018 |
cctttgatggtttcaatgattttacctttgagaccataccagatggtttaactccggtggaaggtgatggtgatgttagtcaagactt |
4503105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 4623710 - 4623448
Alignment:
| Q |
1 |
cctttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagacttgaaatctattcg |
100 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| | |||||||||||||| |||||||| |||||||||||||||| || |||| | ||| || |
|
|
| T |
4623710 |
cctttgatggtttcacggactttaactttgagaccattccagatggtttaacaccaatggaaggtgatggtgatgttagtcaagacataccctctctttc |
4623611 |
T |
|
| Q |
101 |
tgaatcgattagaaataaattcatttacccttttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgctta |
200 |
Q |
| |
|
||| || || || || || ||| | | || ||| | |||||||| || | |||| |||| ||||| | ||||||||||||| || |||||||||||| |
|
|
| T |
4623610 |
tgattcaataaggaagaatttctatcatcccttttgtgaacttcttgcaaaacttcatgactctgccactgctggtcttgttccaccagttacttgctta |
4623511 |
T |
|
| Q |
201 |
gtttctgattgtctattgtcatttaccataaaagttgccgaagaacttgcacttccaattgtt |
263 |
Q |
| |
|
||||| |||||| |||||||||| ||| ||| ||| ||||| | |||||| ||||||||| |
|
|
| T |
4623510 |
gtttccgattgttacatgtcatttacaatacaagctgctgaagagcatgcactcccaattgtt |
4623448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 293
Target Start/End: Original strand, 4483654 - 4483768
Alignment:
| Q |
169 |
aatctggtcttgttcctcctgttacttgcttagtttctgattgtctattgtcatttaccataaaagttgccgaagaacttgcacttccaattgttctcct |
268 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||| |||||||| |
|
|
| T |
4483654 |
aatctggtcttgtgcctcctgttacttgcttagtttca----------tgtcatttaccatacaagttgttgaagaacttgcacttccaacggttctcct |
4483743 |
T |
|
| Q |
269 |
tgtcccatttagtgcttgttctttc |
293 |
Q |
| |
|
||||| |||||||| ||||||||| |
|
|
| T |
4483744 |
tgtcctatttagtgtatgttctttc |
4483768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 4488922 - 4488999
Alignment:
| Q |
1 |
cctttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgtta |
78 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| | ||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
4488922 |
cctttgatggtttaactgattttagctttgagactattccagatggtttaactccaacagatggtgatggcgatgtta |
4488999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 4496181 - 4496104
Alignment:
| Q |
60 |
gatggtgatggtgatgttaatccagacttgaaatctattcgtgaatcgattagaaataaattcatttacccttttcgc |
137 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
4496181 |
gatggtgatggtgatattaatccagacttgcaatctcgtcgtgaatcgattagaaatttatttatttacccttttcgc |
4496104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 4517743 - 4517666
Alignment:
| Q |
1 |
cctttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgtta |
78 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | ||||||||||||||||| || || || ||||||||||||| |
|
|
| T |
4517743 |
cctttgatggtttcactgattttacctttgagactattccagatggtttaactccgatagaaggcgatggtgatgtta |
4517666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 266
Target Start/End: Original strand, 4298225 - 4298488
Alignment:
| Q |
3 |
tttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagacttgaaatctattcgtg |
102 |
Q |
| |
|
|||||||||||||| | |||| |||||||||| | ||||||||| | ||||||| ||| |||||||| ||||||| || |||| | |||| || |
|
|
| T |
4298225 |
tttgatggtttcaccaactttagctttgagactattccagatggtctgactccaacggaaggtgatggagatgttactcaagacataccatctctttccc |
4298324 |
T |
|
| Q |
103 |
aatcgattagaaataaattcatttacccttttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgcttagt |
202 |
Q |
| |
|
|||| || ||||| || ||| || | || ||| | |||||||| |||| |||| ||| ||||| | |||||||||| || || |||||||||||||| |
|
|
| T |
4298325 |
aatcaatcagaaagaacttccttcagccctttggtgaacttcttgctaaacttcgtgattctgccactgctggtcttgtaccaccagttacttgcttagt |
4298424 |
T |
|
| Q |
203 |
ttctgattgtctattgtcatttaccataaaagttgccgaagaacttgcacttccaattgttctc |
266 |
Q |
| |
|
| |||||| | || |||||||||||||| ||| ||| ||||||| |||||| |||||| ||||| |
|
|
| T |
4298425 |
tgctgattttttaatgtcatttaccatacaagctgcggaagaacatgcactcccaattattctc |
4298488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4482268 - 4482200
Alignment:
| Q |
1 |
cctttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatg |
69 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || |||||||||||||||||||||| || ||||||| |
|
|
| T |
4482268 |
cctttgatggtttcactgattttacctttgaaacgataccagatggtttaactccaattgaaggtgatg |
4482200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 4618702 - 4618627
Alignment:
| Q |
3 |
tttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgtta |
78 |
Q |
| |
|
|||||||||||||| || ||||||||||||| | |||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
4618702 |
tttgatggtttcacggactttaactttgagagcattccagatggtttaacaccaatggaaggtgatggtgatgtta |
4618627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4569477 - 4569423
Alignment:
| Q |
1 |
cctttgatggtttcactgattttaactttgagactctaccagatggtttaactcc |
55 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | ||||||||||||||||| |
|
|
| T |
4569477 |
cctttgatggtttcactgattttacctttgagactattccagatggtttaactcc |
4569423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 4255552 - 4255632
Alignment:
| Q |
189 |
gttacttgcttagtttctgattgtctattgtcatttaccataaaagttgccgaagaacttgcacttccaattgttctcctt |
269 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||| ||| ||||| | |||||| ||||||||||||||| |
|
|
| T |
4255552 |
gttacttgcttagtttctgattgttacatgtcatttaccatacaagctgctgaagagcatgcactcccaattgttctcctt |
4255632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 4594413 - 4594336
Alignment:
| Q |
1 |
cctttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgtta |
78 |
Q |
| |
|
|||| ||||||||| ||| ||||| |||||| || ||||||||||| |||| |||||||| |||||||||||||||| |
|
|
| T |
4594413 |
ccttagatggtttccctggttttagctttgaaaccataccagatggtctaacaccaatggaaggtgatggtgatgtta |
4594336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 263
Target Start/End: Original strand, 4259072 - 4259163
Alignment:
| Q |
172 |
ctggtcttgttcctcctgttacttgcttagtttctgattgtctattgtcatttaccataaaagttgccgaagaacttgcacttccaattgtt |
263 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||| ||||||||| ||| ||| ||| ||||| | |||||| ||||||||| |
|
|
| T |
4259072 |
ctggtattgttccacctgttacttgcttagtttctgattgttacatgtcatttagtatacaagctgctgaagagcatgcactcccaattgtt |
4259163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 4265785 - 4265856
Alignment:
| Q |
4 |
ttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatg |
75 |
Q |
| |
|
|||||||||||| ||| ||||| |||||||| ||||||||||| ||||||||||||| || ||||||||| |
|
|
| T |
4265785 |
ttgatggtttcagtgactttaagtttgagaccataccagatggtctaactccaatggaaggcaatggtgatg |
4265856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 4258904 - 4258978
Alignment:
| Q |
4 |
ttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgtta |
78 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| | | ||||||| | |||||| |||| |||||||| ||||||| |
|
|
| T |
4258904 |
ttgatggtttcattgattttacctttgagactattcaagatggtctgactccagtggaaggtgatggcgatgtta |
4258978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 4612443 - 4612641
Alignment:
| Q |
1 |
cctttgatggtttcactgattttaactttgagactctaccagatggtttaactccaa------tggatggtgatggtgatgttaatccagacttgaaatc |
94 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||| || ||||||||||| || || ||| ||||||||||||||||||| || |||| | | | |
|
|
| T |
4612443 |
cctttgttggtttcactgattttacctttgaggctataccagatggtctaccttcaaacgaaggcgatggtgatggtgatgttagtcaagacatatatgc |
4612542 |
T |
|
| Q |
95 |
tattcgtgaatcgattagaaataaattcatttacccttttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttac |
193 |
Q |
| |
|
| || ||||||| || ||||| || ||| | | ||||||||||||||| | |||||||| |||| ||||| | ||||||||||| ||||| ||||| |
|
|
| T |
4612543 |
tctttgtgaatcaatcagaaagaacttcctacaaccttttcgcgaacttatttctagacttaatgactctgccacttctggtcttgtccctccggttac |
4612641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 4471314 - 4471257
Alignment:
| Q |
4 |
ttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatgga |
61 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | ||| ||||||| ||| ||||||| |
|
|
| T |
4471314 |
ttgatggtttcactgactttaactttgagaccattccaaatggttttactgcaatgga |
4471257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 20862535 - 20862821
Alignment:
| Q |
1 |
cctttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagacttgaaatctattcg |
100 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| | |||||||||| |||| || ||||||||| |||||| || |||||| ||||| |||| |
|
|
| T |
20862535 |
cctttgatggtttcactgactttcgctttgagaccgttccagatggttcaacttcac---atggtgatg---atgttagtcaagacttccaatctcttcg |
20862628 |
T |
|
| Q |
101 |
tgaatcgattagaaataaattcatttacccttttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgctta |
200 |
Q |
| |
|
||||| || |||| || ||||| || |||||| |||||||| || | |||| |||| ||| | |||||||||||| | |||||||||||||||||| |
|
|
| T |
20862629 |
tgaattaatcagaacgaacttcatcgacagttttcgtgaacttcttgccaaacttcatgactcttccaaatctggtcttatacctcctgttacttgctta |
20862728 |
T |
|
| Q |
201 |
gtttctgattgtctattgtcatttaccataaaagttgccgaagaacttgcacttccaattgttctccttgtcccatttagtgcttgttctttc |
293 |
Q |
| |
|
||||||||| || | ||||| |||||||| ||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
20862729 |
gtttctgatagtttcatgtcagttaccatacaagttgctgaagaacttgcactcccaattgttctccttatcccatctagtgcttgttctttc |
20862821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 1675924 - 1675847
Alignment:
| Q |
1 |
cctttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgtta |
78 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| || | ||||||||| |||| ||| | || |||||||||||||||| |
|
|
| T |
1675924 |
ccttggatggtttcactgattttagctttgaaaccatcccagatggtctaacaccactagaaggtgatggtgatgtta |
1675847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 16685029 - 16685089
Alignment:
| Q |
18 |
gattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgtta |
78 |
Q |
| |
|
||||||| |||||||||| | ||| |||||||| |||||| |||||||||||| ||||||| |
|
|
| T |
16685029 |
gattttagctttgagactattccatatggtttacctccaacggatggtgatggcgatgtta |
16685089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 259
Target Start/End: Original strand, 2179 - 2437
Alignment:
| Q |
4 |
ttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatgga---tggtgatggtgatgttaatccagacttgaaatctattcg |
100 |
Q |
| |
|
||||||||||| |||||||| ||| |||||| | || ||||||||||||||| |||| || ||||||| |||||| || |||| | ||| || | |
|
|
| T |
2179 |
ttgatggtttcgctgatttttgcttcgagactattcccgatggtttaactccagtggaagatgatgatggtaatgttagtcaagacatactctctctttg |
2278 |
T |
|
| Q |
101 |
tgaatcgattagaaataaattcatttacccttttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgctta |
200 |
Q |
| |
|
| |||| || ||||| || ||| || || |||||||||||||| ||||||||||| || ||||| || ||||||||| | ||||| || ||| ||||| |
|
|
| T |
2279 |
taaatcaatcagaaaaaacttccttcacttctttcgcgaacttcttgctagacttgacgagtctgccaattctggtcttatccctccagtaactagctta |
2378 |
T |
|
| Q |
201 |
gtttctgattgtctattgtcatttaccataaaagttgccgaagaacttgcacttccaat |
259 |
Q |
| |
|
|||||||||||| |||||||||||||| ||| ||| |||||| |||||| ||||| |
|
|
| T |
2379 |
gtttctgattgttacatgtcatttaccatacaagctgctgaagaatatgcactcccaat |
2437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 3088145 - 3088060
Alignment:
| Q |
4 |
ttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagacttg |
89 |
Q |
| |
|
|||||||||||||||||||| |||||||||| | | ||||||| ||||||||||||| ||| |||||||||||| || ||||||| |
|
|
| T |
3088145 |
ttgatggtttcactgattttgtctttgagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagacttg |
3088060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 24104495 - 24104421
Alignment:
| Q |
4 |
ttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgtta |
78 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| ||||||||||| ||||||||||||| || |||||||||||| |
|
|
| T |
24104495 |
ttgatggtttcaatgactttaactttgagaccataccagatggtctaactccaatggaaggcaatggtgatgtta |
24104421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 212
Target Start/End: Complemental strand, 2224 - 2013
Alignment:
| Q |
4 |
ttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatgga---tggtgatggtgatgttaatccagacttgaaatctattcg |
100 |
Q |
| |
|
||||||||||| |||||||| ||| |||||| | || ||||||||||||||| |||| || ||||||| |||||| || |||| | ||| || | |
|
|
| T |
2224 |
ttgatggtttcgctgatttttgcttcgagactattcccgatggtttaactccagtggaagatgatgatggtaatgttagtcaagacatactctctctttg |
2125 |
T |
|
| Q |
101 |
tgaatcgattagaaataaattcatttacccttttcgcgaacttctagctagacttgatgaatctgcaaaatctggtcttgttcctcctgttacttgctta |
200 |
Q |
| |
|
| |||| || ||||| || ||| || || |||||||||||||| ||||||||||| || ||||| || ||||||||| | ||||| || ||| ||||| |
|
|
| T |
2124 |
taaatcaatcagaaaaaacttccttcacttctttcgcgaacttcttgctagacttgacgagtctgccaattctggtcttatccctccagtaactagctta |
2025 |
T |
|
| Q |
201 |
gtttctgattgt |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2024 |
gtttctgattgt |
2013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 1161 - 1084
Alignment:
| Q |
1 |
cctttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgtta |
78 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| || | ||||||||| |||| ||| | || |||||||||||||||| |
|
|
| T |
1161 |
ccttggatggtttcactgattttagctttgaaaccatcccagatggtctaacaccactagaaggtgatggtgatgtta |
1084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 266
Target Start/End: Original strand, 3418 - 3512
Alignment:
| Q |
172 |
ctggtcttgttcctcctgttacttgcttagtttctgattgtctattgtcatttaccataaaagttgccgaagaacttgcacttccaattgttctc |
266 |
Q |
| |
|
||||||||||||| | ||||||||| |||| |||||||| || ||||||||||| ||| ||| ||||||| |||||| |||||||||||| |
|
|
| T |
3418 |
ctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccatacaagctgctgaagaacatgcactcccaattgttctc |
3512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 1282831 - 1282759
Alignment:
| Q |
6 |
gatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgtta |
78 |
Q |
| |
|
||||||||||||||||||| |||||| || | ||||||||| |||| || | || |||||||||||||||| |
|
|
| T |
1282831 |
gatggtttcactgattttagctttgaaaccatcccagatggtctaacatcactagaaggtgatggtgatgtta |
1282759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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