View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11577_low_35 (Length: 256)

Name: NF11577_low_35
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11577_low_35
NF11577_low_35
[»] chr8 (5 HSPs)
chr8 (2-239)||(39047296-39047532)
chr8 (2-106)||(5076268-5076372)
chr8 (10-106)||(4412597-4412693)
chr8 (28-105)||(37226988-37227065)
chr8 (70-107)||(35161494-35161531)
[»] chr1 (12 HSPs)
chr1 (2-107)||(1181503-1181608)
chr1 (2-107)||(16313900-16314005)
chr1 (2-106)||(7014994-7015098)
chr1 (2-90)||(43514353-43514441)
chr1 (28-107)||(12068014-12068093)
chr1 (11-98)||(9355411-9355498)
chr1 (2-107)||(49000788-49000893)
chr1 (41-98)||(16315368-16315425)
chr1 (25-97)||(25901345-25901417)
chr1 (2-106)||(33296425-33296529)
chr1 (25-106)||(25901396-25901477)
chr1 (2-86)||(44490684-44490768)
[»] chr5 (7 HSPs)
chr5 (2-106)||(12143809-12143913)
chr5 (2-106)||(29195198-29195302)
chr5 (2-107)||(35048688-35048792)
chr5 (2-98)||(20882908-20883004)
chr5 (2-106)||(2743862-2743966)
chr5 (25-107)||(13275060-13275142)
chr5 (2-45)||(40018105-40018148)
[»] chr4 (12 HSPs)
chr4 (2-98)||(22923327-22923423)
chr4 (2-98)||(22927980-22928076)
chr4 (2-98)||(22984259-22984355)
chr4 (2-98)||(22997847-22997943)
chr4 (2-107)||(54185616-54185721)
chr4 (2-106)||(12657202-12657308)
chr4 (2-107)||(45864960-45865065)
chr4 (2-93)||(32304853-32304944)
chr4 (25-106)||(1939397-1939478)
chr4 (17-106)||(50333980-50334069)
chr4 (2-107)||(49285492-49285597)
chr4 (2-107)||(41420640-41420743)
[»] chr6 (3 HSPs)
chr6 (2-107)||(1031791-1031896)
chr6 (2-107)||(7527074-7527179)
chr6 (2-107)||(35018748-35018853)
[»] chr3 (5 HSPs)
chr3 (2-107)||(46637066-46637171)
chr3 (2-107)||(46182936-46183041)
chr3 (2-45)||(30842123-30842166)
chr3 (2-107)||(34436977-34437082)
chr3 (2-46)||(20513508-20513552)
[»] chr2 (4 HSPs)
chr2 (2-107)||(19380228-19380333)
chr2 (2-107)||(5848099-5848204)
chr2 (2-98)||(11816089-11816185)
chr2 (2-45)||(187267-187310)
[»] chr7 (3 HSPs)
chr7 (2-98)||(432940-433036)
chr7 (2-106)||(44226529-44226633)
chr7 (2-106)||(23943735-23943839)
[»] scaffold0001 (1 HSPs)
scaffold0001 (2-45)||(185436-185479)


Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 39047296 - 39047532
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| |||||||  |||||||| ||||||||||  ||    
T  39047296 ttaactaacgcatagtttttcacttgcgttagttaactagcgcaaggataaatttaaaacgattgtagggcgcgaataaaatgtgttgggtggagaacag 39047395  T
Q  102 aattctnnnnnnnnntatgtaatgtaatcctttctcaatagtgaaaagcac--catagagtgatcttttggaagtccacacctatgatgtccctccatgg 199  Q
    ||||||         |||||| ||||||| |||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||    
T  39047396 aattctaaaaaaaa-tatgta-tgtaatc-tttctcaatagtgaaaagcacaccatacagtgatcttttggaagtccacacctatgatgtccctccatgg 39047492  T
Q  200 cccaaaaagtttgtaaattcacttccatgaaccgactttc 239  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39047493 cccaaaaagtttgtaaattcacttccatgaaccgactttc 39047532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 5076268 - 5076372
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    ||||||| ||||||||||| || |||||||||||||||| ||||||| ||||||| ||||| ||| ||||||||||||| |||||| |||||||||| ||    
T  5076268 ttaactagcgcatagttttacatttgcgttagttaactaacgcaatggtaaatttgaaacggctgcaaggcgcgagcaacatgtgcagggtggagagcag 5076367  T
Q  102 aattc 106  Q
    |||||    
T  5076368 aattc 5076372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 4412693 - 4412597
Alignment:
Q  10 cgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtagaattc 106  Q
    ||||||||||| || |||||| |||||| |||||||| | |||||||  |||| ||| | |||||||||||||||||||||||  |||| |||||||    
T  4412693 cgcatagttttacacttgcgtgagttaattagcgcaaaggtaaatttggaacggctgcagggcgcgagcaaaatgtgctgggtaaagagcagaattc 4412597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 37227065 - 37226988
Alignment:
Q  28 cgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtagaatt 105  Q
    ||||||||||||||| ||| | |||||||  || | ||| | |||||||||||||||||||||||| |||| ||||||    
T  37227065 cgttagttaactagcacaaaggtaaatttggaatggctgcagggcgcgagcaaaatgtgctgggtgaagagcagaatt 37226988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 35161531 - 35161494
Alignment:
Q  70 ggcgcgagcaaaatgtgctgggtggagagtagaattct 107  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  35161531 ggcgcgagcaaaatgtgcagggtgaagagtagaattct 35161494  T

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Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 1181503 - 1181608
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||| | ||||||| ||| ||||||| | ||||||||||||||||||||||||||| ||    
T  1181503 ttaactaacgcatagtttttcacttgcgttagttaactagcgcaagggtaaatttgaaaagactgtaggacgcgagcaaaatgtgctgggtggagagcag 1181602  T
Q  102 aattct 107  Q
    ||||||    
T  1181603 aattct 1181608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 16314005 - 16313900
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||| | ||||||| ||||| ||| | | ||||||||||||||||||||||||||| |     
T  16314005 ttaactaacgcatagtttttcacttgcgttagttaactagcgcaagggtaaatttgaaacggctgcatgacgcgagcaaaatgtgctgggtggagagcat 16313906  T
Q  102 aattct 107  Q
    ||||||    
T  16313905 aattct 16313900  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 7014994 - 7015098
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    ||||||||||| |||||||||| |||||||||||||||||||||| | |||||||  |||| ||| | ||||||||||||||||||||||||||||| ||    
T  7014994 ttaactaacgcgtagtttttcacttgcgttagttaactagcgcaagggtaaatttcgaacggctgcagggcgcgagcaaaatgtgctgggtggagagcag 7015093  T
Q  102 aattc 106  Q
    |||||    
T  7015094 aattc 7015098  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 43514441 - 43514353
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgg 90  Q
    |||||||  |||||||||| || |||||||||||||||| ||||| | ||||||||||||| ||| | | |||||||||||||||||||    
T  43514441 ttaactagtgcatagttttacacttgcgttagttaactaacgcaagggtaaatttaaaacggctgcaggacgcgagcaaaatgtgctgg 43514353  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 12068014 - 12068093
Alignment:
Q  28 cgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtagaattct 107  Q
    ||||||||||||| ||||| |||||||||  |||| ||| | ||||||||||||||||||||||||||||| | ||||||    
T  12068014 cgttagttaactaacgcaaggataaatttggaacggctgcagggcgcgagcaaaatgtgctgggtggagagcataattct 12068093  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 9355411 - 9355498
Alignment:
Q  11 gcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagag 98  Q
    |||||||||| || |||||||||||||||||||||| | |||| |||||||    | | |||||||||||||||||| ||||||||||    
T  9355411 gcatagttttacacttgcgttagttaactagcgcaagggtaaacttaaaacaggcgcagggcgcgagcaaaatgtgcagggtggagag 9355498  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 49000788 - 49000893
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    ||||||| ||||||  ||| || |||||| |||||||||| |||| | |||||||| |||| ||  | |||||||||||||||||||||||| |||| |     
T  49000788 ttaactagcgcatacatttacacttgcgtgagttaactagtgcaagggtaaatttagaacggctacagggcgcgagcaaaatgtgctgggtgaagagcaa 49000887  T
Q  102 aattct 107  Q
    ||||||    
T  49000888 aattct 49000893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 16315368 - 16315425
Alignment:
Q  41 gcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagag 98  Q
    |||||| |||||||||  |||| ||||| |||||||||||||||||| ||||||||||    
T  16315368 gcgcaaggataaatttggaacggctgtagggcgcgagcaaaatgtgcagggtggagag 16315425  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 25901417 - 25901345
Alignment:
Q  25 ttgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggaga 97  Q
    ||||| |||||||||| ||||| | |||||||   ||| || || ||||||||||||||||||||||||||||    
T  25901417 ttgcgctagttaactaacgcaagggtaaatttggtacggctatagggcgcgagcaaaatgtgctgggtggaga 25901345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 33296529 - 33296425
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    ||||||| ||||||  ||| || |||||| ||||||||| ||||| | |||||||  |||   |||| ||||||||||||||||||||| || |||| ||    
T  33296529 ttaactagcgcatacatttacacttgcgtgagttaactaacgcaagggtaaatttggaacagatgtagggcgcgagcaaaatgtgctggatgaagagcag 33296430  T
Q  102 aattc 106  Q
    |||||    
T  33296429 aattc 33296425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 25901396 - 25901477
Alignment:
Q  25 ttgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtagaattc 106  Q
    |||||||||||||||||||||| | | |||||   ||||||| | | || ||||||||||| || ||||||||| |||||||    
T  25901396 ttgcgttagttaactagcgcaaaggtgaatttggtacgactgcaggacgtgagcaaaatgtacttggtggagagcagaattc 25901477  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 44490684 - 44490768
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtg 86  Q
    ||||||| ||||||  ||| || |||||| |||||||||| |||| | |||||||  |||| ||| | |||||||||||||||||    
T  44490684 ttaactagcgcatacatttacacttgcgtgagttaactagtgcaagggtaaatttggaacggctgcagggcgcgagcaaaatgtg 44490768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 12143913 - 12143809
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||| |||| ||| | ||||||||||||||||||| ||||||||| ||    
T  12143913 ttaactaacacatagtttttcacttgcgttagttaactagcgcaaaggtaaatttagaacggctgcagggcgcgagcaaaatgtgctaggtggagagcag 12143814  T
Q  102 aattc 106  Q
    |||||    
T  12143813 aattc 12143809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 29195302 - 29195198
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||| | |||||||  |||| | | | || ||||||||||| |||||||||||||| ||    
T  29195302 ttaactaacgcatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggccgcagggagcgagcaaaatatgctgggtggagagcag 29195203  T
Q  102 aattc 106  Q
    |||||    
T  29195202 aattc 29195198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 35048792 - 35048688
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    ||||||||||||| |||||||| |||||||| ||||||| ||||| | ||||||| ||||| ||| | || |||||||||||||||||||||||||| ||    
T  35048792 ttaactaacgcat-gtttttcacttgcgttaattaactaacgcaagggtaaatttgaaacggctgcagggagcgagcaaaatgtgctgggtggagagcag 35048694  T
Q  102 aattct 107  Q
    ||||||    
T  35048693 aattct 35048688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 20883004 - 20882908
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagag 98  Q
    ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| | |||| |||||||||  |||||||||||||    
T  20883004 ttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcatggcgtgagcaaaatacgctgggtggagag 20882908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 2743862 - 2743966
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    ||||||| ||||||  ||| || || ||| ||||||||||||||| |||||||||  |||| ||| ||||| |||||||||||||||||||| |||| ||    
T  2743862 ttaactagcgcatacatttacacttacgtgagttaactagcgcaaggataaatttggaacggctgcaaggcacgagcaaaatgtgctgggtgaagagcag 2743961  T
Q  102 aattc 106  Q
    |||||    
T  2743962 aattc 2743966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 13275060 - 13275142
Alignment:
Q  25 ttgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtagaattct 107  Q
    |||||| ||||||||||||||||| |||||||  ||||  || | |||||||||||||||||| ||||| |||| ||||||||    
T  13275060 ttgcgtgagttaactagcgcaatggtaaattttgaacggttgcagggcgcgagcaaaatgtgcggggtgaagaggagaattct 13275142  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 40018148 - 40018105
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgca 45  Q
    ||||||||||||||||||| || |||||||||||||||| ||||    
T  40018148 ttaactaacgcatagttttacacttgcgttagttaactaacgca 40018105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 22923327 - 22923423
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagag 98  Q
    ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| |||||||||||||||||||||||||||||||    
T  22923327 ttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcaaggcgcgagcaaaatgtgctgggtggagag 22923423  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 22927980 - 22928076
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagag 98  Q
    ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| |||||||||||||||||||||||||||||||    
T  22927980 ttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcaaggcgcgagcaaaatgtgctgggtggagag 22928076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 22984259 - 22984355
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagag 98  Q
    ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| |||||||||||||||||||||||||||||||    
T  22984259 ttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcaaggcgcgagcaaaatgtgctgggtggagag 22984355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 22997847 - 22997943
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagag 98  Q
    ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| |||||||||||||||||||||||||||||||    
T  22997847 ttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcaaggcgcgagcaaaatgtgctgggtggagag 22997943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 54185616 - 54185721
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    ||||||| ||||||||||| || |||||||||||||||||||||| | ||||||| ||||| ||| | |||||||||||||| ||| |||||||||| ||    
T  54185616 ttaactagcgcatagttttacacttgcgttagttaactagcgcaagggtaaatttgaaacggctgcagggcgcgagcaaaatatgcagggtggagagcag 54185715  T
Q  102 aattct 107  Q
    ||||||    
T  54185716 aattct 54185721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 12657202 - 12657308
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaag--gcgcgagcaaaatgtgctgggtggagagt 99  Q
    ||||||||| |||||||||||| ||| |||||||||||||||||| | |||||||  |||| ||| | |  ||||||||||||||||||||||||||||     
T  12657202 ttaactaacacatagtttttcacttgtgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgcgagcaaaatgtgctgggtggagagc 12657301  T
Q  100 agaattc 106  Q
    |||||||    
T  12657302 agaattc 12657308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 45864960 - 45865065
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    ||||||||||||||||||| || |||| |||||||||||||||||   |||||||| ||||  || | |||||||||||||||||| ||||||| || ||    
T  45864960 ttaactaacgcatagttttacacttgcattagttaactagcgcaagagtaaatttagaacggttgcagggcgcgagcaaaatgtgcagggtggatagcag 45865059  T
Q  102 aattct 107  Q
    ||||||    
T  45865060 aattct 45865065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 32304944 - 32304853
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtg 93  Q
    ||||||||| ||||||||| || |||||| ||||||||||||||| | |||||||| |||| ||| ||| |||||||||||||||| |||||    
T  32304944 ttaactaacacatagttttacacttgcgtgagttaactagcgcaagggtaaatttagaacggctgcaagacgcgagcaaaatgtgcagggtg 32304853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 1939397 - 1939478
Alignment:
Q  25 ttgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtagaattc 106  Q
    ||||||||||||||||||| || |||||||||  |||| ||| | ||||||||||||||||||||||| ||||| |||||||    
T  1939397 ttgcgttagttaactagcgtaaggataaatttggaacggctgcagggcgcgagcaaaatgtgctgggtagagagcagaattc 1939478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 50334069 - 50333980
Alignment:
Q  17 tttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtagaattc 106  Q
    ||||||| |||||||||||||||||||||| | |||||||  ||||  |||| || ||||||||||||||| |||||||||| |||||||    
T  50334069 tttttcacttgcgttagttaactagcgcaagggtaaatttggaacggttgtagggtgcgagcaaaatgtgccgggtggagagcagaattc 50333980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 49285597 - 49285492
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    ||||||| ||||||||||| || |||| |||||||| ||  |||| | ||||||||||||| ||  ||| |||||||||||||||| ||||||| || ||    
T  49285597 ttaactagcgcatagttttacacttgcattagttaattaatgcaagggtaaatttaaaacggctacaagccgcgagcaaaatgtgcagggtggaaagcag 49285498  T
Q  102 aattct 107  Q
    ||||||    
T  49285497 aattct 49285492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 41420640 - 41420743
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    ||||||| ||||||||||| ||  ||||||| |||||||||||||   |||||||  |||| ||| | ||||||| |||||| |||  |||| |||||||    
T  41420640 ttaactagcgcatagttttaca--tgcgttacttaactagcgcaagagtaaatttggaacggctgcatggcgcgaacaaaatatgcaaggtgaagagtag 41420737  T
Q  102 aattct 107  Q
    ||||||    
T  41420738 aattct 41420743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 1031791 - 1031896
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| | || |||||||||||||||||||||||||| ||    
T  1031791 ttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctggacggtgcgagcaaaatgtgctgggtggagagcag 1031890  T
Q  102 aattct 107  Q
    | ||||    
T  1031891 agttct 1031896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 7527074 - 7527179
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    ||||||||| |||| |||| || |||||| ||||||||||||||| | |||||||| |||| ||| | |||||||||||||||| |||| || |||| |     
T  7527074 ttaactaacacataattttacacttgcgtgagttaactagcgcaagggtaaatttagaacggctgcagggcgcgagcaaaatgtactggatgaagagcat 7527173  T
Q  102 aattct 107  Q
    ||||||    
T  7527174 aattct 7527179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 35018748 - 35018853
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    |||| |||||||||||||| || |||||| |||||||||| || | | |||||||  |||| ||| | | ||||||||||||||| |||||| |||| ||    
T  35018748 ttaaataacgcatagttttacacttgcgtgagttaactagtgcgagggtaaatttggaacggctgcaggacgcgagcaaaatgtgttgggtgaagagcag 35018847  T
Q  102 aattct 107  Q
    ||||||    
T  35018848 aattct 35018853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 46637066 - 46637171
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    ||||||| ||||||||||| || ||||||||||||||||||| || |||||||||  |||| ||| | |||||||||||||||||| || ||||||| |     
T  46637066 ttaactagcgcatagttttacatttgcgttagttaactagcgtaaggataaatttggaacggctgcatggcgcgagcaaaatgtgcaggatggagagcat 46637165  T
Q  102 aattct 107  Q
    ||||||    
T  46637166 aattct 46637171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 46183041 - 46182936
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    |||||||||||||| |||| || |||||||| ||||||||||||| | ||||||| ||||| ||| | || | |||||||||||||  ||||||||| ||    
T  46183041 ttaactaacgcataattttacacttgcgttatttaactagcgcaagggtaaatttgaaacggctgcagggtgtgagcaaaatgtgcaaggtggagagcag 46182942  T
Q  102 aattct 107  Q
    ||||||    
T  46182941 aattct 46182936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 30842123 - 30842166
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgca 45  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||    
T  30842123 ttaactaacgcataggtttacaattacgttagttaactagcgca 30842166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 34437082 - 34436977
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    ||||||| ||||||  ||| || |||||| |||||||||||| || | |||||||  |||| ||| | | ||||||||||||||||| | || |||| ||    
T  34437082 ttaactagcgcatacatttacacttgcgtgagttaactagcgtaagggtaaatttggaacggctgcaggacgcgagcaaaatgtgcttgatgaagagcag 34436983  T
Q  102 aattct 107  Q
    ||||||    
T  34436982 aattct 34436977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 20513552 - 20513508
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaa 46  Q
    ||||||| ||||||||||| || |||||||||||||||| |||||    
T  20513552 ttaactatcgcatagttttacacttgcgttagttaactaacgcaa 20513508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 19380228 - 19380333
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    ||||||||||||||  ||| || ||||||||||||||||||||||   |||||||  |||| ||| | ||||||||||||||||||||||||||||| |     
T  19380228 ttaactaacgcatacatttacacttgcgttagttaactagcgcaagagtaaatttggaacggctgcagggcgcgagcaaaatgtgctgggtggagagcaa 19380327  T
Q  102 aattct 107  Q
    ||||||    
T  19380328 aattct 19380333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 5848099 - 5848204
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    ||||||| ||||||||||| || || ||||||||||||||||||| | |||||||  || | |||   |||||||||||||||||| ||||||| || ||    
T  5848099 ttaactagcgcatagttttacacttacgttagttaactagcgcaagggtaaatttggaatggctgctgggcgcgagcaaaatgtgcagggtggatagcag 5848198  T
Q  102 aattct 107  Q
    ||||||    
T  5848199 aattct 5848204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 11816089 - 11816185
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagag 98  Q
    |||||||  |||||||||| || |||||| ||||||||||||||| | ||||||| ||||| ||| | ||  ||||||||||||| |||||| ||||    
T  11816089 ttaactagtgcatagttttacacttgcgtgagttaactagcgcaagggtaaatttgaaacggctgcagggtacgagcaaaatgtgatgggtgaagag 11816185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 187267 - 187310
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgca 45  Q
    ||||||||||||||||||| || |||||||||||||||| ||||    
T  187267 ttaactaacgcatagttttacacttgcgttagttaactaacgca 187310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 432940 - 433036
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagag 98  Q
    |||||||||||||| |||| || |||||||||||||||||||||| | ||||||| ||||| |||   || ||||||||||||||| ||||||||||    
T  432940 ttaactaacgcataattttacacttgcgttagttaactagcgcaagggtaaatttgaaacggctgccgggtgcgagcaaaatgtgcagggtggagag 433036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 44226529 - 44226633
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    ||||||||| |||||||||||| ||||||| ||||||||| |||| | ||||||| ||||| ||  | ||| ||| ||||||||||||||||||||| ||    
T  44226529 ttaactaacacatagtttttcacttgcgttggttaactagagcaagggtaaatttgaaacggctacagggcacgaacaaaatgtgctgggtggagagcag 44226628  T
Q  102 aattc 106  Q
    |||||    
T  44226629 aattc 44226633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 23943735 - 23943839
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 101  Q
    ||||||| ||||||||||| ||  ||||||||||||||| ||||| | || ||||| |||| ||| |  ||||||||||||||||| ||||| |||| ||    
T  23943735 ttaactagcgcatagttttacacctgcgttagttaactaacgcaagggtatatttagaacggctgcagagcgcgagcaaaatgtgcagggtgaagagcag 23943834  T
Q  102 aattc 106  Q
    |||||    
T  23943835 aattc 23943839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 185479 - 185436
Alignment:
Q  2 ttaactaacgcatagtttttcaattgcgttagttaactagcgca 45  Q
    ||||||||||||||||||| || |||||||||||||||| ||||    
T  185479 ttaactaacgcatagttttacacttgcgttagttaactaacgca 185436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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