View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11577_low_4 (Length: 540)
Name: NF11577_low_4
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11577_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Complemental strand, 52577711 - 52577183
Alignment:
| Q |
1 |
atatatagtgcagggaaccacatttgtgctgcagaagcaaactgaacccagacaaaagttattaacagcaatttcatcgggggtgggtgttggagaggta |
100 |
Q |
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| T |
52577711 |
atatatagtgcagggaaccacatttgtgctgcagaagcaaactgaacccagacaaaagttattaacagcaatttcatcgggggtgggtgttcgagaggta |
52577612 |
T |
|
| Q |
101 |
agggtgctcnnnnnnnnctctataaacataactggaatatttccaatgtcactatttttcacatccttaattccaacaggcaatagataaactcatttcc |
200 |
Q |
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| T |
52577611 |
agggtgctcttttttt--tcaataaacataactggaatatttccaatgtcactatttttcacatccttaattccaacaggcaatagataaactcatttcc |
52577514 |
T |
|
| Q |
201 |
gtaaataagaattctggggaagaaaatccagatctagaagagggcgaatggcatatgatatggaattcacaggtagattttgaaatacaaacgaagagtt |
300 |
Q |
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| T |
52577513 |
ttaaataagaattctggggaagaagatccagaactagaagagggcgaatggcagatgatatggaattcacaggtagattttgaaatacaaacgaagagtt |
52577414 |
T |
|
| Q |
301 |
ccaactgataattttgtttttctcatttgaaattaannnnnnnagggagtactgtttgaagatgatttaaatgtaaacaattatcttacaaggttttatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
52577413 |
ccaactgataattttgtttttctcatttgaaattaatttttttaaggagtactgtttgaagatgatttaaatgtaaacaattatcttactaggttttatt |
52577314 |
T |
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| Q |
401 |
tttcgtatgtaaacaacttattctctacagactgtgactgatagttggttagagaatgctgccaatggtctgatgggaaagcaggtatcaagttcatctt |
500 |
Q |
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||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52577313 |
tttggtatgtaaacaacttattctctacagactgtgacggatagttggttagagaatgctgccaatggtctgatgggaaagcaggtatcaagttcatctt |
52577214 |
T |
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| Q |
501 |
gtgcatttaatttaattgccacaggttctgc |
531 |
Q |
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|||||| |||||||||||||||| ||||||| |
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| T |
52577213 |
gtgcatgtaatttaattgccacaagttctgc |
52577183 |
T |
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