View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11577_low_5 (Length: 448)
Name: NF11577_low_5
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11577_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 23 - 443
Target Start/End: Original strand, 24377417 - 24377827
Alignment:
| Q |
23 |
agcttcatcgttgctcgttaatttgtctttattattgtagctcaggattttctatcatatgcaccaaactcaagcttccattgagttatatatatatgct |
122 |
Q |
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| T |
24377417 |
agcttcatcgttgctcgttaatttgtctttattattgtagctcaggattttctatcatatgcagcaaactcaaacttccattgagttata----tatgct |
24377512 |
T |
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| Q |
123 |
tggataaagatgaataagcaaaactctcttcaaataacaactgcttctgttgcttatgatgatgatggacatgccaaaaggactggtaaaattctaaatt |
222 |
Q |
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| T |
24377513 |
tggataaagatgaataagcaaaattctctacaaataacgactgcttctgttgcttatgatgatgatggacatgccaaaaggactggtaaaattctaaatt |
24377612 |
T |
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| Q |
223 |
gcttcataaccaattcattttcattttcatatgcatcaatttgaatactaaggttttattctgctacaaattctgcaggaaatttaaagagtgccttggc |
322 |
Q |
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| T |
24377613 |
gcttcataaccaa------ttcattttcatatgcatgcatttgaatactaagcttttatcctgctacaaattctgcaggaaatttaaagagtgccttggc |
24377706 |
T |
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| Q |
323 |
tcatatcatcactggtgttattgggtctggtgttttgtcattggcatggagtactgctcaactaggatggattggagggccacttgcattgctttcttgt |
422 |
Q |
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| T |
24377707 |
tcatatcatcactggtgttatcgggtctggtgttttgtcattggcatggagtactgctcaactaggatggattggagggccacttgcattactttcttgt |
24377806 |
T |
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| Q |
423 |
gcaatagctacctatgcttct |
443 |
Q |
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| T |
24377807 |
gcaatagctacctatgtttct |
24377827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 176 - 437
Target Start/End: Original strand, 24400410 - 24400664
Alignment:
| Q |
176 |
ttatgatgatgatggacatgccaaaaggactggtaaaattctaaattgcttcataaccaattcattttcattttcatatgcatcaatttgaatactaagg |
275 |
Q |
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| T |
24400410 |
ttatgatgatgacggacgtgccaaaaggacaggtaaaattctctatagcatcataaccaattgattttcat------atacttgaatttgaatactgaag |
24400503 |
T |
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| Q |
276 |
ttttattctgctacaaattctgcaggaaatttaaagagtgccttggctcatatcatcactggtgttattgggtctggtgttttgtcattggcatggagta |
375 |
Q |
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| T |
24400504 |
ttttattcggg-ataaattctgcaggaaatgtaaaaagtgctgtggctcatatcatcacagctgttattggttctggtgttttgtctttggcatggagta |
24400602 |
T |
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| Q |
376 |
ctgctcaactaggatggattggagggccacttgcattgctttcttgtgcaatagctacctat |
437 |
Q |
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| T |
24400603 |
tttctcaattaggatggattggagggccacttgccttgttttcttgtgcaatagctacctat |
24400664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 296 - 429
Target Start/End: Original strand, 24412972 - 24413105
Alignment:
| Q |
296 |
tgcaggaaatttaaagagtgccttggctcatatcatcactggtgttattgggtctggtgttttgtcattggcatggagtactgctcaactaggatggatt |
395 |
Q |
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| T |
24412972 |
tgcaggaaatttaaagagtgctgtggctcatatcatcacagcagttattggttctggtgttctgtcattggcatggagtactgctcaattaggatggatt |
24413071 |
T |
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| Q |
396 |
ggagggccacttgcattgctttcttgtgcaatag |
429 |
Q |
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| T |
24413072 |
ggaggaccagttaccttgctttgttgtgcaatag |
24413105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 296 - 429
Target Start/End: Complemental strand, 24421069 - 24420936
Alignment:
| Q |
296 |
tgcaggaaatttaaagagtgccttggctcatatcatcactggtgttattgggtctggtgttttgtcattggcatggagtactgctcaactaggatggatt |
395 |
Q |
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| T |
24421069 |
tgcaggaaatttaaagagtgctgtggctcatatcatcacagcagttattggttctggtgttctgtcattggcatggagtactgctcaattaggatggatt |
24420970 |
T |
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| Q |
396 |
ggagggccacttgcattgctttcttgtgcaatag |
429 |
Q |
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||||| ||| || | ||||||| ||||||||||| |
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| T |
24420969 |
ggaggaccagttaccttgctttgttgtgcaatag |
24420936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 121 - 210
Target Start/End: Original strand, 24412796 - 24412885
Alignment:
| Q |
121 |
cttggataaagatgaataagcaaaactctcttcaaataacaactgcttctgttgcttatgatgatgatggacatgccaaaaggactggta |
210 |
Q |
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| T |
24412796 |
cttggataaaaatggatgggaaaaactctcttcaaataacaaaagcttctggtgcttatgatgatgatggacatgcaaaaaggactggta |
24412885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 121 - 210
Target Start/End: Complemental strand, 24421245 - 24421156
Alignment:
| Q |
121 |
cttggataaagatgaataagcaaaactctcttcaaataacaactgcttctgttgcttatgatgatgatggacatgccaaaaggactggta |
210 |
Q |
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| T |
24421245 |
cttggataaaaatggatgggaaaaactctcttcaaataacaaaagcttctggtgcttatgatgatgatggacatgcaaaaaggactggta |
24421156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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