View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11577_low_6 (Length: 439)
Name: NF11577_low_6
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11577_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 40689816 - 40690156
Alignment:
| Q |
1 |
caattcaaacccaatcataaatcaatttcccttcaattgaataacaatggtaagggaaatctacatggtggaagcaacaataacaacaagtctaaggttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40689816 |
caattcaaacccaatcataaatcaatttctcttcaattgaataacaatggtaagggaaatctacatggtggaagcaacaataacaacaagtctaaggttc |
40689915 |
T |
|
| Q |
101 |
atgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatgaggcgtcaccgcgcgccggtgggaacatctgcagccaacac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||||| |
|
|
| T |
40689916 |
atgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatgaggcgccaccgtgcaccggtgggaacttctgcagccaacac |
40690015 |
T |
|
| Q |
201 |
tacactctctttgacaccaatggctttggaacctgatgaagatcatcctagaaagaaaaggaatgttttgtctttggatttggatctcaaccttcctgca |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40690016 |
cacactctctttgacaacaatggctttggaacctgatgaagatcatcctagaaagaaaaggaatgttttgtctttggatttggatctcaaccttcctgca |
40690115 |
T |
|
| Q |
301 |
cctgaagatgatcatagagaatctaagtttgcctttgcttc |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40690116 |
cctgaagatgatcatagagaatctaagtttgcctttgcttc |
40690156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 34710513 - 34710589
Alignment:
| Q |
84 |
caacaagtctaaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatga |
160 |
Q |
| |
|
|||||| || |||||| ||| ||| ||||||||||||||| ||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
34710513 |
caacaaatccaaggtttatgggtgctccatttgtggttctaaattcacatctggccaggcacttggtggccatatga |
34710589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 34714219 - 34714285
Alignment:
| Q |
94 |
aaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatga |
160 |
Q |
| |
|
|||||| ||| ||| ||||||||||||||| ||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
34714219 |
aaggtttatgggtgctccatttgtggttctaaattcacatctggccaggcacttggtggccatatga |
34714285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 247 - 335
Target Start/End: Original strand, 34714363 - 34714448
Alignment:
| Q |
247 |
cctagaaagaaaaggaatgttttgtctttggatttggatctcaaccttcctgcacctgaagatgatcatagagaatctaagtttgcctt |
335 |
Q |
| |
|
||||||||||||| |||||| | ||||||||||||||||||||||||||||| || |||| ||||| ||||| | ||||||||||| |
|
|
| T |
34714363 |
cctagaaagaaaatgaatgtct---ctttggatttggatctcaaccttcctgcagcttaagaagatcaaagagagttcaagtttgcctt |
34714448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 323
Target Start/End: Original strand, 34710689 - 34710740
Alignment:
| Q |
272 |
ctttggatttggatctcaaccttcctgcacctgaagatgatcatagagaatc |
323 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| ||||| |||||||| |
|
|
| T |
34710689 |
ctttggatttggatctcaaccttcctgcagcttaagaagatcaaagagaatc |
34710740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34714069 - 34714111
Alignment:
| Q |
1 |
caattcaaacccaatcataaatcaatttcccttcaattgaata |
43 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
34714069 |
caattcaaaaccaataataaatcaatttcccttaaattgaata |
34714111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 20925806 - 20925729
Alignment:
| Q |
85 |
aacaagtctaaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatgagg |
162 |
Q |
| |
|
|||||| | ||| ||||||||||||||||||||||||| || |||||||| || |||||| | ||||| || |||||| |
|
|
| T |
20925806 |
aacaaggccaagattcatgagtgttccatttgtggttcagagttcacatccggacaagcattgggtggacacatgagg |
20925729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 35506177 - 35506246
Alignment:
| Q |
93 |
taaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatgagg |
162 |
Q |
| |
|
||||||||||| |||||| || ||||| ||||||||||||| ||||||||| | ||||| || |||||| |
|
|
| T |
35506177 |
taaggttcatgggtgttcaatatgtggagctgaattcacatcaggtcaagcattgggtggtcacatgagg |
35506246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University