View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11577_low_8 (Length: 422)
Name: NF11577_low_8
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11577_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 9 - 406
Target Start/End: Original strand, 8296568 - 8296967
Alignment:
| Q |
9 |
agcacagactatattagaagctcttataaaatatgaaggggcctcatggaagacaataaatttacagaaat---cagaaatannnnnnnaccaagaacac |
105 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| ||||||||||| |
|
|
| T |
8296568 |
agcacaaactatattagaagctcttataaaatatgaaggggcctcagggaagacaataaatttacataaatgatcagaaatatttttt-accaagaacac |
8296666 |
T |
|
| Q |
106 |
gaatcacacgactagggagatggtgaagagaattttacaagtttcagagagtataggctcaggaaaatatttgggtttaccatcgagaccgtatttggaa |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8296667 |
gaatcacacgactagggagatggtgaagagaattttacaagtttcagagagtataggctcaggaaaatatttgggtttaccatcgagaccgcatttggaa |
8296766 |
T |
|
| Q |
206 |
gagagaatacaaaattggtcaggaaaacatttatccattgcaagaagagaggtactaactaaatcagtttctcaattgattccaacttaattaacgagtt |
305 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| || | ||||| |
|
|
| T |
8296767 |
gagagaatacaaaattggtcatgaaaacatttatccattgcaggaagagaggtactaattaaatcagtttctcaattgattccaacttattttatgagtt |
8296866 |
T |
|
| Q |
306 |
cctttctacttccgacaactttaggggaggagatgcaaatattgttgaatttgttttggtggggatcaaatagacaaaacggaaaaggtatcaattgtta |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
8296867 |
tctttctacttccgacaactttaggggaggagatgcaaatgttgttgaatttgttttggtggggatcaaatagacaaaacgcgaaaggtatcaactgtta |
8296966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 209 - 401
Target Start/End: Original strand, 14343997 - 14344189
Alignment:
| Q |
209 |
agaatacaaaattggtcaggaaaacatttatccattgcaagaagagaggtactaactaaatcagtttctcaattgattccaacttaattaacgagttcct |
308 |
Q |
| |
|
|||||||||||||||| |||||| || ||||| | || ||||||||||||| | |||||||||| |||||||||| ||||| || || | ||||| | |
|
|
| T |
14343997 |
agaatacaaaattggttaggaaagcacttatctaaagcttgaagagaggtacttattaaatcagttgctcaattgataccaacatattttatgagtttat |
14344096 |
T |
|
| Q |
309 |
ttctacttccgacaactttaggggaggagatgcaaatattgttgaatttgttttggtggggatcaaatagacaaaacggaaaaggtatcaatt |
401 |
Q |
| |
|
|||||||| |||||||||||| |||||||| ||| |||| |||| |||||||||||||| ||| |||| || ||||||||| |||||| |
|
|
| T |
14344097 |
ttctacttttgacaactttaggtgaggagatttaaaatatgttaaattcattttggtggggatcgaatcgacataatggaaaaggtgtcaatt |
14344189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 208 - 384
Target Start/End: Complemental strand, 15162650 - 15162472
Alignment:
| Q |
208 |
gagaatacaaaattggtcaggaaaacatttatccattgcaagaagagaggtactaactaaatcagtttctcaattgattccaactta-atta-acgagtt |
305 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | | ||||||||||||| | ||| | ||| |||||||||||||||| || ||| | ||||| |
|
|
| T |
15162650 |
gagaatacaacattggtcaggaaaacatttatctaaagttggaagagaggtacttattaagttcgttgctcaattgattccaacatatattgtatgagtt |
15162551 |
T |
|
| Q |
306 |
cctttctacttccgacaactttaggggaggagatgcaaatattgttgaatttgttttggtggggatcaaatagacaaaa |
384 |
Q |
| |
|
||||| |||| |||||||||||||| || |||| |||| | ||||||||| || | |||||||||| ||||||||||| |
|
|
| T |
15162550 |
cctttatactcccgacaactttaggagaaaagattcaaaaaatgttgaattggtatcggtggggatcgaatagacaaaa |
15162472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 402
Target Start/End: Complemental strand, 35056070 - 35056014
Alignment:
| Q |
346 |
attgttgaatttgttttggtggggatcaaatagacaaaacggaaaaggtatcaattg |
402 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||| |||||||| || ||||| |
|
|
| T |
35056070 |
attgttgaattctttttggtgggggtcgaatagacaaaatggaaaaggaataaattg |
35056014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University