View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11577_low_9 (Length: 406)
Name: NF11577_low_9
Description: NF11577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11577_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 10 - 391
Target Start/End: Complemental strand, 11820753 - 11820370
Alignment:
| Q |
10 |
gaagaaaagtggtgtacaaagattctgttggtgctgccaacgatgcagagnnnnnnncactaagaacaaaaaatggtatagaaaaatagcatagagaaat |
109 |
Q |
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| T |
11820753 |
gaagaaaagtggtgtacaaagattctgttggtgctgccaacgatgcagagaaaaaaacactaagaacaaaaaatggtatagaaaaatagcatagagaaat |
11820654 |
T |
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| Q |
110 |
tggatttgattttgccatgnnnnnnn--gtaataactgttatgaaaaatgataaaggatttgtgcggttttatagagaaggatttgtaacatgtttgagt |
207 |
Q |
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| T |
11820653 |
tggatttgattttgccatgtttttttttgtaataactgatatgaaaaatgataaaggatttgtgcggttttatagaaaaggatttgtaacatgtttgagt |
11820554 |
T |
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| Q |
208 |
agaaacttcaaccaacgcgtctaaatgttggtcgagaaggtgagaattgtcgtattaactaattaataatgataatgatttttctannnnnnnnaataat |
307 |
Q |
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| T |
11820553 |
agaaacttcaaccaacgcgtctaaatgttggtcgagaaggtgagaattgtcgtattaactaattaataatgataatgatttttctattttttttaataat |
11820454 |
T |
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| Q |
308 |
cttgtctcttatttttggtagcttactattggatattatcctagtatagctggtcttttgactgaaaagttagtaattatattt |
391 |
Q |
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| T |
11820453 |
cttgtctcttatttttggtagcttactattggatattttcctagtatagctggtcttttgactgagaagttagtaattatattt |
11820370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 11835742 - 11835793
Alignment:
| Q |
140 |
taactgttatgaaaaatgataaaggatttgtgcggttttatagagaaggatt |
191 |
Q |
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| T |
11835742 |
taactgtgatgaaaaatagtgaaggatttgtgcggttttatagagaaggatt |
11835793 |
T |
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