View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11578_high_12 (Length: 240)
Name: NF11578_high_12
Description: NF11578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11578_high_12 |
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| [»] chr1 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 12113832 - 12113608
Alignment:
| Q |
17 |
acttaaattgttttggttatactatttatgttannnnnnnnaaatgttgtcaaatagtggcactgcagcactatggcgtaataaaatttgaacaaactgc |
116 |
Q |
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| T |
12113832 |
acttaaattgttttgattatactatttatgttatttttttaaaatgttgtcaaatagtggcactgcagcactatggcgtaataaaatttgaacaaactgc |
12113733 |
T |
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| Q |
117 |
tattgttctgcgatacgctatttcgnnnnnnnnc-ataaggaatgactttttaagctttcatagatgtaaaaaatataaaggatctgtcttctgttaaac |
215 |
Q |
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| T |
12113732 |
tattgttctgcgatacgctatttcgaaaaaaaaccagaaggaatgactttttaagctttcatagatgtaaaaaatataaaggatctgtcttctgttaaac |
12113633 |
T |
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| Q |
216 |
tcttacttttatgcttaaattttat |
240 |
Q |
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| T |
12113632 |
tcttacttttatgcttaaattttat |
12113608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 139
Target Start/End: Original strand, 35488281 - 35488320
Alignment:
| Q |
100 |
aaatttgaacaaactgctattgttctgcgatacgctattt |
139 |
Q |
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| T |
35488281 |
aaatttgaacaaactgctattgttccgggatacgctattt |
35488320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 41014913 - 41014823
Alignment:
| Q |
150 |
cataaggaatgactttttaagctttcatagatgtaaaaaatataaaggatctgtcttctgttaaactcttacttttatgcttaaattttat |
240 |
Q |
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| T |
41014913 |
catagggaatgactttttaaactttcatagatgtcaaaaatacaaaggatctgttttctgttaaattcttacttttttcctaaaattttat |
41014823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 41015106 - 41015026
Alignment:
| Q |
59 |
aatgttgtcaaatagtggcactgcagcactatggcgtaataaaatttgaacaaactgctattgttctgcgatacgctattt |
139 |
Q |
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| T |
41015106 |
aatgttgtcaaacagcggcactgcagcactgtggtgttacaaaatttgaacaaactgctattgttccgtgatatgctattt |
41015026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 14199999 - 14200037
Alignment:
| Q |
101 |
aatttgaacaaactgctattgttctgcgatacgctattt |
139 |
Q |
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| T |
14199999 |
aatttgaacaaactgctaatgttctgcgatatgctattt |
14200037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 29378509 - 29378547
Alignment:
| Q |
101 |
aatttgaacaaactgctattgttctgcgatacgctattt |
139 |
Q |
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| T |
29378509 |
aatttgaacaaattgatattgttctgcgatacgctattt |
29378547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 26174924 - 26174963
Alignment:
| Q |
99 |
aaaatttgaacaaactgctattgttctgcgatacgctattt |
139 |
Q |
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| T |
26174924 |
aaaatttgaacaaa-tgctattgttctgcgatacactattt |
26174963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 3764796 - 3764832
Alignment:
| Q |
101 |
aatttgaacaaactgctattgttctgcgatacgctat |
137 |
Q |
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| T |
3764796 |
aatttgaacaaactgttattgttcagcgatacgctat |
3764832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 9336407 - 9336443
Alignment:
| Q |
101 |
aatttgaacaaactgctattgttctgcgatacgctat |
137 |
Q |
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| T |
9336407 |
aatttgaacaaaccgctattgttctgtgatacgctat |
9336443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 8473402 - 8473442
Alignment:
| Q |
99 |
aaaatttgaacaaactgctattgttctgcgatacgctattt |
139 |
Q |
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| T |
8473402 |
aaaatttgaacaaattgatattgttctgcgatacactattt |
8473442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 55314495 - 55314531
Alignment:
| Q |
100 |
aaatttgaacaaactgctattgttctgcgatacgcta |
136 |
Q |
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| T |
55314495 |
aaatttgaacaaattgctattgttctgcgatatgcta |
55314531 |
T |
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