View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11578_high_6 (Length: 338)
Name: NF11578_high_6
Description: NF11578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11578_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 331
Target Start/End: Complemental strand, 42894742 - 42894431
Alignment:
| Q |
20 |
tacacactgtcgtcgtagattcgatgttaatattatgttacttttgttgccgctatttttattgaatgatgtcaaacatgaacaaattggataaaacagc |
119 |
Q |
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| T |
42894742 |
tacacactgtcgtcgtagatacgatgttaatattatgttacttttgttgccgctatttttattgaatgatgtcaaacatgaacaaattggataaaacagc |
42894643 |
T |
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| Q |
120 |
aatattaataaaagagaaatggaagtcaagataagctaaaagattgattttgaccttaaatttcaacaagaaaactaaaagggtacatcatgtaaaaccc |
219 |
Q |
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| T |
42894642 |
aatattaataaaagagaaatggaagtcaagataagctaaaagattgattttgaccttaaatttcaacaagaaaactaaaagggtacatcatgtaaaaccc |
42894543 |
T |
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| Q |
220 |
tactacactgaaacccccctaatattcttaaatttcacagtacatatannnnnnnnnactattgattaaaatagtgctatttacgctccacttcttgtct |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42894542 |
tactacactgaaacccccctaatattcttaaatttcacagtacatttttttttttttactattgattaaaatagtgctatttacgctccacttcttgtct |
42894443 |
T |
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| Q |
320 |
ctttctctgctt |
331 |
Q |
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|||||||||||| |
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| T |
42894442 |
ctttctctgctt |
42894431 |
T |
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