View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11578_low_1 (Length: 639)
Name: NF11578_low_1
Description: NF11578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11578_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 109 - 472
Target Start/End: Complemental strand, 41875774 - 41875412
Alignment:
| Q |
109 |
aacaataatcaacattcgacattctacctcagtatgcggccatcattagaagaaggtataaatatagcaccgttttctcgtcataatttatttgcaactt |
208 |
Q |
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| T |
41875774 |
aacattaatcaacattcgacactctacctcagtatgcggccatcattagaagaaggtataaatatagcaccggtttcttgtcgtaatatatacgcaactt |
41875675 |
T |
|
| Q |
209 |
cttcccttgaccgtatgttgggctcagaaaacttaaccttgccatcgtacctcttaacattctcaagtttacaaaatgacacatttttcggagtaacaat |
308 |
Q |
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| T |
41875674 |
catctcttgaccttatgttggcctcagaaaagttaaccttaccatcatacctcttaacattctcaagtttacaaattggcacattttttggagtaacaac |
41875575 |
T |
|
| Q |
309 |
gtatgcagggattccccttagtttttctgccaaagccaattcagcagcatggtttccactgatttcagagaacaacatcagaagagaaataaattaactg |
408 |
Q |
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| T |
41875574 |
gtatgcagggattccccttagttttgctgccaaagccaatgcagcagcatgatttccactgatttcagagaacaacattagaagag-aataaattaactg |
41875476 |
T |
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| Q |
409 |
aatcagttttgaaaaaacaacttatgtaattattgcataaaacaaacctgttgtgtgttgtaac |
472 |
Q |
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| T |
41875475 |
aatcagatttgaaaaaataacttatgtatttattgcataaaacaaacctgctgtgtgttataac |
41875412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 117 - 393
Target Start/End: Original strand, 40868457 - 40868733
Alignment:
| Q |
117 |
tcaacattcgacattctacctcagtatgcggccatcattagaagaaggtataaatatagcaccgttttctcgtcataatttatttgcaacttcttccctt |
216 |
Q |
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| T |
40868457 |
tcaacattcaacagtgtacctcagtatgcgcccatcattataaggatgtataaaaatagcaccagtttcttgccacactttattcgcagtttcctctctt |
40868556 |
T |
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| Q |
217 |
gaccgtatgttgggctcagaaaacttaaccttgccatcgtacctcttaacattctcaagtttacaaaatgacacatttttcggagtaacaatgtatgcag |
316 |
Q |
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| T |
40868557 |
gatcgcatattggcctcagaccagataacctgaccaccataccgcttcacattctcaattttacatgttggcgcatttttaggaataacaatgtatgcag |
40868656 |
T |
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| Q |
317 |
ggattccccttagtttttctgccaaagccaattcagcagcatggtttccactgatttcagagaacaacatcagaaga |
393 |
Q |
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| T |
40868657 |
ggatcccccgtagttttgctgccagagccaatgcagcagcatggtttccactgatttcagagaacaacgtcagaaga |
40868733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 129 - 372
Target Start/End: Original strand, 24817942 - 24818185
Alignment:
| Q |
129 |
attctacctcagtatgcggccatcattagaagaaggtataaatatagcaccgttttctcgtcataatttatttgcaacttcttcccttgaccgtatgttg |
228 |
Q |
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||||||||||| ||||||||||||||| |||||||||||| | ||||||| ||||| | | | ||| || ||||||||| |||||| | || || |
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| T |
24817942 |
attctacctcattatgcggccatcatttgaagaaggtatatagatagcacttgtttcttgcctcactttgttcataacttcttctcttgactgcatatta |
24818041 |
T |
|
| Q |
229 |
ggctcagaaaacttaaccttgccatcgtacctcttaacattctcaagtttacaaaatgacacatttttcggagtaacaatgtatgcagggattcccctta |
328 |
Q |
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| T |
24818042 |
tcctcagccaaattaacgtttccatcgtacctcttaatattttcaactttacaagatggtgcacttttcggaaccacaataaatgcagggatccccctta |
24818141 |
T |
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| Q |
329 |
gtttttctgccaaagccaattcagcagcatggtttccactgatt |
372 |
Q |
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||| ||||||||| ||| ||||||||||||| ||||||||| |
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| T |
24818142 |
tctttgctgccaaagataatgcagcagcatggttcccactgatt |
24818185 |
T |
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