View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11578_low_10 (Length: 292)
Name: NF11578_low_10
Description: NF11578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11578_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 7e-58; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 140 - 277
Target Start/End: Original strand, 32257018 - 32257155
Alignment:
| Q |
140 |
tcgagaagaaacacttcgatttcctcaatttagtctttgttgaaagtcaaacctaatttccacttttaaatctgcaagaaaggaacgacaagctcttctt |
239 |
Q |
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| T |
32257018 |
tcgagaagaaacgcttcggtttcctcaatttagtctttgttgaaagtcaaacctaatttccaattttaaatctgcaagaaaggaacgacgagctcttctt |
32257117 |
T |
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| Q |
240 |
cttctagaaaaatgaatgaggtatttaaccaaatattt |
277 |
Q |
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| T |
32257118 |
cttctagaaaaattaattaggtatttaaccaaatattt |
32257155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 32265800 - 32265884
Alignment:
| Q |
8 |
tgagaagaagcagaattatacaatgttctaaggaaggaaagtaatcatgaccttgaaggtgaaacgaaaaacggcaaatgaaaaatg |
94 |
Q |
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| T |
32265800 |
tgagaagaagcagaactgtataat--tctaaggaaggaaagtaatcataaccttgaaggtgaaacgaaaaacggcaaatgaaaaatg |
32265884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 33178737 - 33178795
Alignment:
| Q |
33 |
ttctaaggaaggaaagtaatcatgaccttgaaggtgaaacgaaaaacggcaaatgaaaa |
91 |
Q |
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| T |
33178737 |
ttctaaggaaggaaagtaatcatgaccgtgaaggtgaaacggaaaactgcaaataaaaa |
33178795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 33179021 - 33179084
Alignment:
| Q |
204 |
tttaaatctgcaagaaaggaacgacaagctcttcttcttctagaaaaatgaatgaggtatttaa |
267 |
Q |
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| T |
33179021 |
tttaaatctgcaagaaaggaacaatgagctcttcttcttccagaaaaatgaataaggtagttaa |
33179084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 32265937 - 32265992
Alignment:
| Q |
142 |
gagaagaaacacttcgatttcctcaatttagtctttgttgaaagtcaaacctaatt |
197 |
Q |
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| T |
32265937 |
gagaagaaatgcttcggttttctcaatttagtctttgttaaaagttaaacctaatt |
32265992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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