View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11578_low_12 (Length: 249)
Name: NF11578_low_12
Description: NF11578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11578_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 12113611 - 12113375
Alignment:
| Q |
1 |
ttatacctgtctgtctatacattactaaacttttagttttggaatgttagattatctaatatgatattcaacaaacacctttttaatatatgtgcattat |
100 |
Q |
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| T |
12113611 |
ttatacctgtctgtctacacattactaaacttttagttttggaattttagattatctaatatgatattcaacaaacatctttttaatatatgtgcattat |
12113512 |
T |
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| Q |
101 |
gatgcacctttcatcgcatatggggcctaactgttctgcatgtttttggcagggttatgtactttactctgtaaaaaacaaacttaaaccagaatatatt |
200 |
Q |
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| T |
12113511 |
gatgcacctttcatcgcatatggggcctaactgttctgcatgtttttggcagggttatatactttactctgtaaaaaacaaacttaaaccagaatatatt |
12113412 |
T |
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| Q |
201 |
ggtctttctagtgacgaaattaagaaattgaagttct |
237 |
Q |
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| T |
12113411 |
ggtctttctagtgacgaaattaagaaattgaagttct |
12113375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 23 - 237
Target Start/End: Complemental strand, 41014814 - 41014602
Alignment:
| Q |
23 |
tactaaacttttagttttggaatgttagattatctaatatgatattcaacaaacacctttttaatatatgtgcattatgatgcacctttcatcgcatatg |
122 |
Q |
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| T |
41014814 |
tactaaacttttagttttggaattttagattatctaatatgatattcaacaaacacctttttaatat---tgcaatatgatgcacctttcatcgcatatg |
41014718 |
T |
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| Q |
123 |
gggcc-taactgttctgcatgtttttggcagggttatgtactttactctgtaaaaaacaaacttaaaccagaatatattggtctttctagtgacgaaatt |
221 |
Q |
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| T |
41014717 |
gggccctaactgttctgcatgtttttggcagggttatatactttactctgtaaaaaacaaacttaaaccagaatatattggtctttctggtgacgaaatt |
41014618 |
T |
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| Q |
222 |
aagaaattgaagttct |
237 |
Q |
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| T |
41014617 |
aagaaattgaagttct |
41014602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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