View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11578_low_4 (Length: 431)
Name: NF11578_low_4
Description: NF11578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11578_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Original strand, 53022630 - 53023037
Alignment:
| Q |
17 |
acatatagcatacattcaatctctcgaaagagtatcagcagctttgctcgattattttgaagaaaatgaggcacttgaattctcattcgattcattcgtg |
116 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53022630 |
acatatagcatacattcaatctctcaaaagagtatcagcagctttgctcgattattttgaagaaaatgaggcacttgaattctcattcgattcattcgtg |
53022729 |
T |
|
| Q |
117 |
actccacctgcgaagaacaaagccagtcctgcagtcatttcgatatcaaaacattcttcaccaacaacaattgagtttggacctaatactacaacattga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53022730 |
actccacctgcgaagaacaaagccagtcctgcagtcatttcgatatcgaaacattcttcaccaacaacaattgagtttggacctaatactacaacattga |
53022829 |
T |
|
| Q |
217 |
aagtgaattatttgaggccaagtggcaatccaccgatttcagtcgaggaaaggcctccatcgcccgaaatggttcgagttgagatgtattctccaatgta |
316 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53022830 |
aagtgaattatttgaggccaagtggtaatccaccgatttcagtcgaggaaaggcctccatcgcccgaaatggttcgagttgagatgtattctccaatgta |
53022929 |
T |
|
| Q |
317 |
ccaatatggtatggatggnnnnnnnggtatgcaatcccagcctatgaatgtgtcaatttttgcctattctccgaataacaggcctgttatccttcccgct |
416 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
53022930 |
ccaatatggtatggatggtttttttggtatgcaatcccagcctatgaatgcgtcaatttttgcctattctccaaataacaggcctgttatccctcccgct |
53023029 |
T |
|
| Q |
417 |
tcatctca |
424 |
Q |
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||| |||| |
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| T |
53023030 |
tcacctca |
53023037 |
T |
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