View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11578_low_6 (Length: 398)

Name: NF11578_low_6
Description: NF11578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11578_low_6
NF11578_low_6
[»] chr4 (10 HSPs)
chr4 (7-388)||(5523732-5524112)
chr4 (268-385)||(21161334-21161450)
chr4 (233-385)||(9538917-9539068)
chr4 (245-385)||(19374302-19374440)
chr4 (239-371)||(19363379-19363510)
chr4 (239-385)||(32637441-32637585)
chr4 (239-277)||(2678107-2678145)
chr4 (239-277)||(15651571-15651609)
chr4 (239-277)||(15821786-15821824)
chr4 (239-277)||(26532708-26532746)
[»] chr8 (8 HSPs)
chr8 (205-385)||(37031430-37031610)
chr8 (226-388)||(8781066-8781226)
chr8 (249-376)||(14984176-14984303)
chr8 (244-385)||(18836302-18836442)
chr8 (239-277)||(2962094-2962132)
chr8 (239-277)||(6431917-6431955)
chr8 (239-277)||(22658679-22658717)
chr8 (245-277)||(35520763-35520795)
[»] chr7 (7 HSPs)
chr7 (217-385)||(25844691-25844859)
chr7 (226-372)||(19389522-19389670)
chr7 (226-394)||(12410465-12410633)
chr7 (239-277)||(12188785-12188823)
chr7 (260-385)||(24442595-24442719)
chr7 (239-277)||(28131627-28131665)
chr7 (239-277)||(47166034-47166072)
[»] chr6 (5 HSPs)
chr6 (236-385)||(10358251-10358400)
chr6 (226-282)||(390167-390223)
chr6 (239-285)||(21996870-21996916)
chr6 (240-277)||(8614003-8614040)
chr6 (240-277)||(33317955-33317992)
[»] chr2 (6 HSPs)
chr2 (264-388)||(37444112-37444236)
chr2 (249-388)||(15341250-15341389)
chr2 (244-285)||(24761927-24761968)
chr2 (239-277)||(24228395-24228433)
chr2 (239-277)||(24249202-24249240)
chr2 (244-285)||(19617493-19617534)
[»] chr3 (2 HSPs)
chr3 (240-289)||(4471873-4471922)
chr3 (250-286)||(26817358-26817394)
[»] chr5 (7 HSPs)
chr5 (301-385)||(28718948-28719032)
chr5 (331-385)||(31651054-31651108)
chr5 (239-277)||(32993-33031)
chr5 (239-277)||(7864610-7864648)
chr5 (239-277)||(39428514-39428552)
chr5 (240-277)||(9810910-9810947)
chr5 (240-277)||(12764166-12764203)
[»] scaffold0023 (1 HSPs)
scaffold0023 (239-286)||(108325-108372)
[»] scaffold1849 (1 HSPs)
scaffold1849 (239-277)||(207-245)
[»] scaffold0264 (1 HSPs)
scaffold0264 (239-277)||(2846-2884)
[»] scaffold0037 (1 HSPs)
scaffold0037 (240-277)||(38740-38777)


Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 7 - 388
Target Start/End: Original strand, 5523732 - 5524112
Alignment:
Q  7 atggacatcatgaaaatatttggtttcttagaaaaagaactcagatgagaaaaacagtagttactaaatttgaacatactcaaaagatctgagtaggatt 106  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5523732 atggacatattgaaaatatttggtttcttagaaaaagaactcagatgagaaaaacagtagttactaaatttgaacatactcagaagatctgagtaggatt 5523831  T
Q  107 ttccaaattaaaaaggtaattttatttatgcgatagaattggttatgtttatattgggtgttttcttaacataaagaaagttaaaaagactaatcatgaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5523832 ttccaaattaaaaaggtaattttatttatgcgatagaattggttatgtttatattgggtgttttcttaacataaagaaagttaaaaagactaatcatgaa 5523931  T
Q  207 gggaaaccgatatcattataggcagcgcaaattaaaattttcgatttccttttcttggatcattacgaatttgacatgatcagcgatagaattgttacct 306  Q
     |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5523932 -ggaaaccgatatcattataggccgcgcaaattaaaattttcgatttccttttcttggatcattacgaatttgacatgatcagtgatagaattgttacct 5524030  T
Q  307 cttgaagcactgaaaagaattttgatcacagcaaagcaacatagcaaagcctctactcgtccacacgaacggttctcctttg 388  Q
    ||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||    
T  5524031 cttgaagtacagaaaagaattttgatcacagcaaagcaacatagtaaagtctctactcgtccacacgaaaggttctcctttg 5524112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 385
Target Start/End: Original strand, 21161334 - 21161450
Alignment:
Q  268 attacgaatttgacatgatcagcgatagaattgttacctcttgaagcactgaaaagaattttgatcacagcaaagcaacatagcaaagcctctactcgtc 367  Q
    |||||||||||||||||||||| || ||||| ||||||||| ||||    ||||||| | |||||||||||||||||| | ||||||||||||||| |||    
T  21161334 attacgaatttgacatgatcagtgaaagaat-gttacctctcgaagtgtagaaaagagtcttgatcacagcaaagcaaaagagcaaagcctctacttgtc 21161432  T
Q  368 cacacgaacggttctcct 385  Q
    |||||||| |||||||||    
T  21161433 cacacgaatggttctcct 21161450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 233 - 385
Target Start/End: Complemental strand, 9539068 - 9538917
Alignment:
Q  233 gcaaattaaaattttcgatttccttttcttggatcattacgaatttgacatgatcagcgatagaattgttacctcttgaagcactgaaaagaattttgat 332  Q
    ||||| ||||| ||| ||||| ||||| |||||||||||||||||||||||||||||  | || || |||||||||| |||  |  |||| | ||| |||    
T  9539068 gcaaaataaaaattttgattttctttttttggatcattacgaatttgacatgatcagtaaaag-atggttacctcttaaagtgcataaaacagtttcgat 9538970  T
Q  333 cacagcaaagcaacatagcaaagcctctactcgtccacacgaacggttctcct 385  Q
    ||||||  | |||  |||||||||||||||||||||||||||| ||| |||||    
T  9538969 cacagctgatcaatctagcaaagcctctactcgtccacacgaatggtgctcct 9538917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 385
Target Start/End: Complemental strand, 19374440 - 19374302
Alignment:
Q  245 tttcgatttccttttcttggatcattacgaatttgacatgatcagcga-tagaattgttacctcttgaagcactgaaaagaattttgatcacagcaaagc 343  Q
    |||||||||||||| ||||||||||||| ||||||||||||| || || ||| | |||||||||| ||||  |  ||||||||  ||||||||||||||     
T  19374440 tttcgatttcctttccttggatcattacaaatttgacatgatgagtgattagta-tgttacctctcgaagtgcataaaagaatcatgatcacagcaaag- 19374343  T
Q  344 aacatagcaaagcctctactcgtccacacgaacggttctcct 385  Q
     | | | || |||||||||||||||||||||||||| |||||    
T  19374342 -aaaaaacagagcctctactcgtccacacgaacggtgctcct 19374302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 371
Target Start/End: Complemental strand, 19363510 - 19363379
Alignment:
Q  239 taaaattttcgatttccttttcttggatcattacgaatttgacatgatcagcgatagaattgttacctcttgaagcactgaaaagaattttgatcacagc 338  Q
    ||||| ||| ||||| ||||  ||||||||||||||||||||||| ||||| |||   | |||||||||| ||||| | || | |||| | ||||| | |    
T  19363510 taaaaattttgatttgctttctttggatcattacgaatttgacattatcagtgattcgaatgttacctctcgaagcgcagacaggaatctcgatcaaaac 19363411  T
Q  339 aaagcaacatagcaaagcctctactcgtccaca 371  Q
    ||||||| | ||||||| || ||||||||||||    
T  19363410 aaagcaa-aaagcaaagtctttactcgtccaca 19363379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 385
Target Start/End: Complemental strand, 32637585 - 32637441
Alignment:
Q  239 taaaattttcgatttccttttcttggatcattacgaatttgacatgatcagcga-tagaattgttacctcttgaagcactgaaaagaattttgatcacag 337  Q
    ||||||||||||||| |||| ||||||| |||| ||||||||||||||||  || ||||| |||||||||| ||||  | || | |||| | |||||||     
T  32637585 taaaattttcgattttcttt-cttggattattatgaatttgacatgatcaatgattagaa-tgttacctctcgaagttcagacatgaatctcgatcacaa 32637488  T
Q  338 caaagcaacatagcaaagcctctactcgtccacacgaacggttctcct 385  Q
    |||||||| | || | ||||| ||||||||||  |||||||| |||||    
T  32637487 caaagcaa-aaagtagagcctttactcgtccatgcgaacggtgctcct 32637441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 2678145 - 2678107
Alignment:
Q  239 taaaattttcgatttccttttcttggatcattacgaatt 277  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  2678145 taaaattttcgatttactttccttggatcattacgaatt 2678107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 15651571 - 15651609
Alignment:
Q  239 taaaattttcgatttccttttcttggatcattacgaatt 277  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  15651571 taaaattttcgattttctttccttggatcattacgaatt 15651609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 15821824 - 15821786
Alignment:
Q  239 taaaattttcgatttccttttcttggatcattacgaatt 277  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  15821824 taaaattttcgatttactttccttggatcattacgaatt 15821786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 26532746 - 26532708
Alignment:
Q  239 taaaattttcgatttccttttcttggatcattacgaatt 277  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  26532746 taaaattttcgatttactttccttggatcattacgaatt 26532708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 205 - 385
Target Start/End: Original strand, 37031430 - 37031610
Alignment:
Q  205 aagggaaaccgatatcattataggcagcgcaaattaaaattttcgatttccttttcttggatcattacgaatttgacatgatcagcgatagaattgttac 304  Q
    |||| ||| ||| |||||||||||||||  |||||||| |||| |||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||    
T  37031430 aaggtaaatcgagatcattataggcagcagaaattaaattttttgatttcctttccttggatcattacgaatttaacatgatcagtgatagaattgttac 37031529  T
Q  305 ctcttgaagcactgaaaagaattttgatcacagcaaagcaacatagcaaagcctctactcgtccacacgaacggttctcct 385  Q
    |||||||||  | ||||||||||| ||||||| |||||||| | ||||||||||||||||||||||| |||||||||||||    
T  37031530 ctcttgaagtgcagaaaagaatttcgatcacatcaaagcaatagagcaaagcctctactcgtccacaagaacggttctcct 37031610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 226 - 388
Target Start/End: Original strand, 8781066 - 8781226
Alignment:
Q  226 aggcagcgcaaat-taaaattttcgatttccttttcttggatcattacgaatttgacatgatcagcgatagaattgttacctcttgaagcactgaaaaga 324  Q
    |||||||| |||| ||||||||  |||||||||  |||  ||||||||||||||||||||||||| ||||||| | |||| |||| |||  | ||||||     
T  8781066 aggcagcgaaaatataaaattt--gatttccttcccttcaatcattacgaatttgacatgatcagtgatagaaattttacttctttaagtgcagaaaagg 8781163  T
Q  325 attttgatcacagcaaagcaacatagcaaagcctctactcgtccacacgaacggttctcctttg 388  Q
    ||||||||| || |||||||||  || |||| ||||||||||||||||| ||||||||||||||    
T  8781164 attttgatctcatcaaagcaaccgagaaaagtctctactcgtccacacg-acggttctcctttg 8781226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 249 - 376
Target Start/End: Complemental strand, 14984303 - 14984176
Alignment:
Q  249 gatttccttttcttggatcattacgaatttgacatgatcagcgatagaattgttacctcttgaagcactgaaaagaattttgatcacagcaaagcaacat 348  Q
    |||||||||| || ||||||||||||||||||||||||||  |||  || |||||||||||||||  |||||||| |||| ||||||| ||||||||  |    
T  14984303 gatttcctttcctaggatcattacgaatttgacatgatcaatgatgaaactgttacctcttgaagtgctgaaaaggatttcgatcacaacaaagcaatgt 14984204  T
Q  349 agcaaagcctctactcgtccacacgaac 376  Q
    ||||  | ||||||| ||||||||||||    
T  14984203 agcagtgtctctacttgtccacacgaac 14984176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 385
Target Start/End: Complemental strand, 18836442 - 18836302
Alignment:
Q  244 ttttcgatttccttttcttggatcattacgaatttgacatgatcagcgatagaattgttacctcttgaagcactgaaaagaattttgatcacagcaaagc 343  Q
    ||||| |||| |||| |||||||||||| ||||||||||||||||| |||  || |||||||||| ||||  | || | |||| | ||||||| ||||||    
T  18836442 ttttcaattttctttccttggatcattatgaatttgacatgatcagtgattcaaatgttacctctcgaagtgcagacaggaatctcgatcacaacaaagc 18836343  T
Q  344 aacatagcaaagcctctactcgtccacacgaacggttctcct 385  Q
    || | ||||  ||||||||| |||||| |||||||| |||||    
T  18836342 aa-aaagcagcgcctctactagtccactcgaacggtgctcct 18836302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 2962094 - 2962132
Alignment:
Q  239 taaaattttcgatttccttttcttggatcattacgaatt 277  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  2962094 taaaattttcgattttctttccttggatcattacgaatt 2962132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 6431955 - 6431917
Alignment:
Q  239 taaaattttcgatttccttttcttggatcattacgaatt 277  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  6431955 taaaattttcgattttctttccttggatcattacgaatt 6431917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 22658679 - 22658717
Alignment:
Q  239 taaaattttcgatttccttttcttggatcattacgaatt 277  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  22658679 taaaattttcgattttctttccttggatcattacgaatt 22658717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 277
Target Start/End: Original strand, 35520763 - 35520795
Alignment:
Q  245 tttcgatttccttttcttggatcattacgaatt 277  Q
    |||||||||||||| ||||||||||||||||||    
T  35520763 tttcgatttcctttccttggatcattacgaatt 35520795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 217 - 385
Target Start/End: Original strand, 25844691 - 25844859
Alignment:
Q  217 tatcattataggcagcgcaaattaaaattttcgatttccttttcttggatcattacgaatttgacatgatcagcgatagaattgttacctcttgaagcac 316  Q
    |||||||||||||| || |||||||| |||| ||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||| |     
T  25844691 tatcattataggcaacggaaattaaattttttgatctcctttccttggatcattacgaatttgacatgatcagtgatagaattgttacctctcgaagtat 25844790  T
Q  317 tgaaaagaattttgatcacagcaaagcaacatagcaaagcctctactcgtccacacgaacggttctcct 385  Q
     |||||| |||| ||||||| |||||||||||||||||||  |||||| |||||| |||| ||||||||    
T  25844791 agaaaaggatttcgatcacaacaaagcaacatagcaaagctactactcatccacatgaacagttctcct 25844859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 372
Target Start/End: Complemental strand, 19389670 - 19389522
Alignment:
Q  226 aggcagcgcaaattaaaatttt-cgatttccttttcttggatcattacgaatttgacatg-atcagcgatagaattgttacctcttgaagcactgaaaag 323  Q
    |||||||  ||||||||||||| ||||||  ||| ||| ||| ||||||||||||||||| ||||  |||  ||||||||||||||||||  | |||||     
T  19389670 aggcagcaaaaattaaaatttttcgattttgtttcctttgataattacgaatttgacatgaatcaatgatgaaattgttacctcttgaagtgcagaaaaa 19389571  T
Q  324 aattttgatcacagcaaagcaacatagcaaagcctctactcgtccacac 372  Q
      | | |||||||| ||||||||| ||||  ||||||||||||||||||    
T  19389570 gttctcgatcacagtaaagcaacagagcagtgcctctactcgtccacac 19389522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 394
Target Start/End: Complemental strand, 12410633 - 12410465
Alignment:
Q  226 aggcagcgcaaattaaaattttcgatttccttttcttggatcattacgaatttgacatga-tcagcgatagaattgttacctcttgaagcactgaaaaga 324  Q
    ||||| || |||||||||||||||||| ||||||||| || |||||| || ||||||||| ||||  ||  |||||| ||||||| |||    ||||||     
T  12410633 aggcaacggaaattaaaattttcgattcccttttctttgaacattacaaaattgacatgattcagttatgaaattgtcacctcttcaagtgaagaaaag- 12410535  T
Q  325 attttgatcacagcaaagcaacatagcaaagcctctactcgtccacacgaacggttctcctttgcttctc 394  Q
    || | || |||| |||| |||| |||||  ||||||||| |||||||||||| | ||||||||| |||||    
T  12410534 atctcgaccacatcaaaacaacgtagcagtgcctctactggtccacacgaacagctctcctttggttctc 12410465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 12188785 - 12188823
Alignment:
Q  239 taaaattttcgatttccttttcttggatcattacgaatt 277  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  12188785 taaaattttcgatttactttccttggatcattacgaatt 12188823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 385
Target Start/End: Original strand, 24442595 - 24442719
Alignment:
Q  260 cttggatcattacgaatttgacatgatcagcga-tagaattgttacctcttgaagcactgaaaagaattttgatcacagcaaagcaacatagcaaagcct 358  Q
    |||||||||||||||||||||||||||||  || ||||| ||| |||||| |||   | || |||||| | ||||||| |||||||| | |||| |||||    
T  24442595 cttggatcattacgaatttgacatgatcaatgattagaa-tgtcacctctcgaattgcagacaagaatctcgatcacaacaaagcaa-aaagcagagcct 24442692  T
Q  359 ctactcgtccacacgaacggttctcct 385  Q
    |||||| ||| || ||||||| |||||    
T  24442693 ctactcttcctcatgaacggtgctcct 24442719  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 28131665 - 28131627
Alignment:
Q  239 taaaattttcgatttccttttcttggatcattacgaatt 277  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  28131665 taaaattttcgattttctttccttggatcattacgaatt 28131627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 47166034 - 47166072
Alignment:
Q  239 taaaattttcgatttccttttcttggatcattacgaatt 277  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  47166034 taaaattttcgattttctttccttggatcattacgaatt 47166072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 236 - 385
Target Start/End: Original strand, 10358251 - 10358400
Alignment:
Q  236 aattaaaattttcgatttccttttcttggatcattacgaatttgacatgatcagcgatagaattgttacctcttgaagcactgaaaagaattttgatcac 335  Q
    |||||||||||||||||| |||| |||||||||||||||||| ||||||| ||| ||||||| |||||||||||||||  | ||||| | ||| ||| ||    
T  10358251 aattaaaattttcgattttctttccttggatcattacgaattcgacatgaacagtgatagaaatgttacctcttgaagtgcagaaaacagtttcgattac 10358350  T
Q  336 agcaaagcaacatagcaaagcctctactcgtccacacgaacggttctcct 385  Q
    |||  |||||| |||||||||||||||||||||||||||| |||||||||    
T  10358351 agctgagcaacgtagcaaagcctctactcgtccacacgaatggttctcct 10358400  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 390223 - 390167
Alignment:
Q  226 aggcagcgcaaattaaaattttcgatttccttttcttggatcattacgaatttgaca 282  Q
    |||||| ||||||||||||||| ||||||||||  ||| |||||||||| |||||||    
T  390223 aggcagtgcaaattaaaatttttgatttcctttctttgaatcattacgattttgaca 390167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 285
Target Start/End: Complemental strand, 21996916 - 21996870
Alignment:
Q  239 taaaattttcgatttccttttcttggatcattacgaatttgacatga 285  Q
    ||||||||||||||| | || |||||||||||| |||||||||||||    
T  21996916 taaaattttcgattttcattccttggatcattatgaatttgacatga 21996870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 8614040 - 8614003
Alignment:
Q  240 aaaattttcgatttccttttcttggatcattacgaatt 277  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  8614040 aaaattttcgattttctttccttggatcattacgaatt 8614003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 33317992 - 33317955
Alignment:
Q  240 aaaattttcgatttccttttcttggatcattacgaatt 277  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  33317992 aaaattttcgattttctttccttggatcattacgaatt 33317955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 264 - 388
Target Start/End: Complemental strand, 37444236 - 37444112
Alignment:
Q  264 gatcattacgaatttgacatgatcagcgatagaattgttacctcttgaagcactgaaaagaattttgatcacagcaaagcaacat-agcaaagcctctac 362  Q
    |||||||||||||||||||||||||  |||||| ||||||||||||||||  | ||||||| | | ||||||| ||||| || |  ||||||||||||||    
T  37444236 gatcattacgaatttgacatgatcaatgataga-ttgttacctcttgaagtgcagaaaagattctcgatcacaacaaagtaaaaagagcaaagcctctac 37444138  T
Q  363 tcgtccacacgaacggttctcctttg 388  Q
    ||||||||||||||||| ||||||||    
T  37444137 tcgtccacacgaacggtgctcctttg 37444112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 388
Target Start/End: Original strand, 15341250 - 15341389
Alignment:
Q  249 gatttccttttcttggatcattacgaatttgacatgatcagcga-tagaattgttacctcttgaagcactg-aaaagaattttgatcacagcaaagcaac 346  Q
    ||||||| || |||||||||||||||||||||||||||||| || ||| | ||||| |||| ||||  | | ||||| || |||||| |||||||| ||     
T  15341250 gatttcccttccttggatcattacgaatttgacatgatcagtgattagta-tgttaactctcgaagtgcagaaaaaggatcttgatcgcagcaaag-aaa 15341347  T
Q  347 atagcaaagcctctactcgtccacacgaacggttctcctttg 388  Q
    | |  | |||||||||||||||||||||||||| ||||||||    
T  15341348 aaattagagcctctactcgtccacacgaacggtgctcctttg 15341389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 24761927 - 24761968
Alignment:
Q  244 ttttcgatttccttttcttggatcattacgaatttgacatga 285  Q
    |||||||||| |||| ||||||||||||||||||||||||||    
T  24761927 ttttcgattttctttccttggatcattacgaatttgacatga 24761968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 24228395 - 24228433
Alignment:
Q  239 taaaattttcgatttccttttcttggatcattacgaatt 277  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  24228395 taaaattttcgattttctttccttggatcattacgaatt 24228433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 24249202 - 24249240
Alignment:
Q  239 taaaattttcgatttccttttcttggatcattacgaatt 277  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  24249202 taaaattttcgatttactttccttggatcattacgaatt 24249240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 19617534 - 19617493
Alignment:
Q  244 ttttcgatttccttttcttggatcattacgaatttgacatga 285  Q
    |||| ||||| |||| ||||||||||||||||||||||||||    
T  19617534 tttttgattttctttccttggatcattacgaatttgacatga 19617493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 4471922 - 4471873
Alignment:
Q  240 aaaattttcgatttccttttcttggatcattacgaatttgacatgatcag 289  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  4471922 aaaaatttcgatttcctttccttggatcattacgaatttgacatgatcag 4471873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 26817394 - 26817358
Alignment:
Q  250 atttccttttcttggatcattacgaatttgacatgat 286  Q
    ||||||||| |||||||||||||||||||||||||||    
T  26817394 atttcctttccttggatcattacgaatttgacatgat 26817358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 385
Target Start/End: Original strand, 28718948 - 28719032
Alignment:
Q  301 ttacctcttgaagcactgaaaagaattttgatcacagcaaagcaacatagcaaagcctctactcgtccacacgaacggttctcct 385  Q
    ||||||||||||||   ||||| | ||| ||||| |||  |||||| ||| ||||||| ||||||||||||||||||||||||||    
T  28718948 ttacctcttgaagcgaagaaaatagtttcgatcatagctgagcaacgtagaaaagcctttactcgtccacacgaacggttctcct 28719032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 31651054 - 31651108
Alignment:
Q  331 atcacagcaaagcaacatagcaaagcctctactcgtccacacgaacggttctcct 385  Q
    ||||||||||| ||||||| ||| |||||||||||||||||||||| | ||||||    
T  31651054 atcacagcaaaacaacataacaatgcctctactcgtccacacgaacagatctcct 31651108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 33031 - 32993
Alignment:
Q  239 taaaattttcgatttccttttcttggatcattacgaatt 277  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  33031 taaaattttcgatttactttccttggatcattacgaatt 32993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 7864610 - 7864648
Alignment:
Q  239 taaaattttcgatttccttttcttggatcattacgaatt 277  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  7864610 taaaattttcgattttctttccttggatcattacgaatt 7864648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 39428552 - 39428514
Alignment:
Q  239 taaaattttcgatttccttttcttggatcattacgaatt 277  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  39428552 taaaattttcgattttctttccttggatcattacgaatt 39428514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 9810910 - 9810947
Alignment:
Q  240 aaaattttcgatttccttttcttggatcattacgaatt 277  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  9810910 aaaattttcgattttctttccttggatcattacgaatt 9810947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 12764166 - 12764203
Alignment:
Q  240 aaaattttcgatttccttttcttggatcattacgaatt 277  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  12764166 aaaattttcgattttctttccttggatcattacgaatt 12764203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 108325 - 108372
Alignment:
Q  239 taaaattttcgatttccttttcttggatcattacgaatttgacatgat 286  Q
    ||||| ||||||||||||||  ||||||||||| ||||||||||||||    
T  108325 taaaaatttcgatttcctttcattggatcattatgaatttgacatgat 108372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1849 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1849
Description:

Target: scaffold1849; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 245 - 207
Alignment:
Q  239 taaaattttcgatttccttttcttggatcattacgaatt 277  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  245 taaaattttcgatttactttccttggatcattacgaatt 207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 2846 - 2884
Alignment:
Q  239 taaaattttcgatttccttttcttggatcattacgaatt 277  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  2846 taaaattttcgatttactttccttggatcattacgaatt 2884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 38740 - 38777
Alignment:
Q  240 aaaattttcgatttccttttcttggatcattacgaatt 277  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  38740 aaaattttcgattttctttccttggatcattacgaatt 38777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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