View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11578_low_9 (Length: 293)
Name: NF11578_low_9
Description: NF11578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11578_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 12097627 - 12097413
Alignment:
| Q |
18 |
ggaatagttcctgaagtactcacctttaacaactataaaagatggagtgttcttatgaaaaattatctgattgggcaaggtttgtgggatgttatcagtg |
117 |
Q |
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| T |
12097627 |
ggaatagttcctgaagtactgacctttgataactatgaaagatggagtgttcttatgaaaaattatctgatggggcaaggtctgtgggatgttatcagtg |
12097528 |
T |
|
| Q |
118 |
gtgattctgctgagcctttcttggaagagaattctgaagcacggaagcacttgagcaacaaaagaggcaaaatgttagaagctaccccagatattgagca |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| || ||||| ||||||||| || |||||||||||||| |
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| T |
12097527 |
gtgattctgctgaggctttcttggaagagaattctgaagcaaggaagcatttgagcaacaaaaaagacaaaaagttagaagccactccagatattgagca |
12097428 |
T |
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| Q |
218 |
aggtacgtatctaat |
232 |
Q |
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|||| |||||||||| |
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| T |
12097427 |
aggttcgtatctaat |
12097413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 12116961 - 12116749
Alignment:
| Q |
18 |
ggaatagttcctgaagtactcacctttaacaactataaaagatggagtgttcttatgaaaaattatctgattgggcaaggtttgtgggatgttatcagtg |
117 |
Q |
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| T |
12116961 |
ggaatagttcctgaagtactgacctttgataactatgaaagatggagtgttcttatgaaaaattatctgatggggcaaggtctgtgggatgttatcagtg |
12116862 |
T |
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| Q |
118 |
gtgattctgctgagcctttcttggaagagaattctgaagcacggaagcacttgagcaacaaaagaggcaaaatgttagaagctaccccagatattgagca |
217 |
Q |
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| T |
12116861 |
gtgattctgctgaggctttcttggaagagaattctgaagcattgaagcacttgagcaacaaaaaaggcaaaaagtttgaagccaccccagatattgagca |
12116762 |
T |
|
| Q |
218 |
aggtacgtatcta |
230 |
Q |
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|||| ||||||| |
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| T |
12116761 |
aggttagtatcta |
12116749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 11983940 - 11984145
Alignment:
| Q |
18 |
ggaatagttcctgaagtactcacctttaacaactataaaagatggagtgttcttatgaaaaattatctgattgggcaaggtttgtgggatgttatcagtg |
117 |
Q |
| |
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|||||||||||||||||||| |||| | ||||||| |||||||||||||| |||||| |||||||||||| ||| ||||||||||||| || | |||| |
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| T |
11983940 |
ggaatagttcctgaagtacttacctctgacaactacgaaagatggagtgtttttatgacaaattatctgatggggaaaggtttgtgggactttgttagtg |
11984039 |
T |
|
| Q |
118 |
gtgattctgctgagcctttcttggaagagaattctgaagcacggaagcacttgagcaacaaaagaggcaaaatgttagaagctaccccagatattgagca |
217 |
Q |
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|| ||| ||||||| ||| ||| ||| ||||||| ||||||||||||| |||||| ||||||||| ||||||||||||||||| |
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| T |
11984040 |
agactt---------cttcactggaagaaaataatgaggcagggaagcatttgagcaacaaaaaaggcaaggagttagaagccaccccagatattgagca |
11984130 |
T |
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| Q |
218 |
aggtacgtatctaat |
232 |
Q |
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|||| |||||||||| |
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| T |
11984131 |
aggttcgtatctaat |
11984145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 12050001 - 12050092
Alignment:
| Q |
18 |
ggaatagttcctgaagtactcac--ctt-taacaactataaaagatggagtgttcttatgaaaaattatctgattgggcaaggtttgtggga |
106 |
Q |
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||||||||||||||||||||||| ||| | ||||||| ||||||||||||| | || |||||||||||||| | ||||||| | ||||||| |
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| T |
12050001 |
ggaatagttcctgaagtactcacttcttctgacaactacaaaagatggagtgctattgtgaaaaattatctgttggggcaagatctgtggga |
12050092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 12047277 - 12047341
Alignment:
| Q |
19 |
gaatagttcctgaagtactcacctttaacaactataaaagatggagtgttcttatgaaaaattatctg |
86 |
Q |
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|||||||||||||||||||||||||| ||||||| | |||||||||| |||||||| |||||||| |
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| T |
12047277 |
gaatagttcctgaagtactcacctttgacaactacga---atggagtgtttttatgaaagattatctg |
12047341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 12110598 - 12110557
Alignment:
| Q |
191 |
gttagaagctaccccagatattgagcaaggtacgtatctaat |
232 |
Q |
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||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
12110598 |
gttagaagccaccccagatattgagcaaggtttgtatctaat |
12110557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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