View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11579_high_11 (Length: 378)
Name: NF11579_high_11
Description: NF11579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11579_high_11 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 10922355 - 10921991
Alignment:
| Q |
18 |
gttaagctgttaatcatattgctgcaactgattttgtatatatactcgtaccttgtgaatgataagcattggtgatggtacattatacaggtagtataca |
117 |
Q |
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| T |
10922355 |
gttaagccgttaatcatattgctgcaactgattttgtatatatactcgtaccttgtgaatgataagcgttggtgatggtaaattatacaggtagtataca |
10922256 |
T |
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| Q |
118 |
tagaaaatcgactatagttgttaaaccaattgaatctgtggttagacttgattttcacaa-----caataaatacgatatgtatctacaaattttgcctc |
212 |
Q |
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| T |
10922255 |
tagaaaatcgactatagttgttaaaccaattgaatctgtggttcgacttgattttcacaacactgcaataaatacgatatgtatctacaaattttgcctc |
10922156 |
T |
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| Q |
213 |
caataggcggtgaggttgaattttgataacatgaaataagcactaaaacaatcttaaaagaacgtaaactaagtagagatatattatagaaactaaacca |
312 |
Q |
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| T |
10922155 |
caataggcggtgaggttgaagtttgataacatgaaataagcactaaaacaatcttaaaa-aaagtaaactaagtagagatatattatagaaactaaacca |
10922057 |
T |
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| Q |
313 |
atattggaaattacaagcgttgttcatattattggcaaattagacctgaaaaaattattttcccat |
378 |
Q |
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| T |
10922056 |
atattggaaattataagcgttgttcatattattggcaaattagacctgaaaaaattattttcccat |
10921991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 374
Target Start/End: Complemental strand, 10950418 - 10950377
Alignment:
| Q |
333 |
tgttcatattattggcaaattagacctgaaaaaattattttc |
374 |
Q |
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| T |
10950418 |
tgttcatattattgtcaaattagacctgaaaattttattttc |
10950377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 338
Target Start/End: Complemental strand, 10950504 - 10950452
Alignment:
| Q |
286 |
tagagatatattatagaaactaaaccaatattggaaattacaagcgttgttca |
338 |
Q |
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| T |
10950504 |
tagagatatataatagaaactaaactaagattcgaaataacaagtgttgttca |
10950452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 10951130 - 10951102
Alignment:
| Q |
178 |
caataaatacgatatgtatctacaaattt |
206 |
Q |
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| T |
10951130 |
caataaatacgatatgtatctacaaattt |
10951102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 45407221 - 45407119
Alignment:
| Q |
18 |
gttaagctgttaatcatattgctgcaactgattttgtatatatactcgtaccttgtgaatgataagcattggtgatggtacattatacaggtagtataca |
117 |
Q |
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| T |
45407221 |
gttaagctattaatcatattgctgcaactgattttgta--tataatcgtaccttgtgaatgataggtgct-atactggtacattatacatgtagtataca |
45407125 |
T |
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| Q |
118 |
tagaaa |
123 |
Q |
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|||||| |
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| T |
45407124 |
tagaaa |
45407119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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