View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11579_high_17 (Length: 302)

Name: NF11579_high_17
Description: NF11579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11579_high_17
NF11579_high_17
[»] chr8 (1 HSPs)
chr8 (18-302)||(45347760-45348044)


Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 45348044 - 45347760
Alignment:
Q  18 aacatggtatggtaatgtacatatttatttatagctctcaagctgagaatcattactacataatacatatatgcactgcacataaatatagataaaatca 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45348044 aacatgatatggtaatgtacatatttatttatagctctcaagctgagaatcattactacataatacatacatgcactgcacataaatatagataaaatca 45347945  T
Q  118 aaggaaggaacttaggatgatggaaatagaaagataacctgcttgcccatcttaacgacggcatatggatcactagtattaacatcacgaacggcgaggt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45347944 aaggaaggaacttaggatgatggaaatagaaagataacctgcttgcccatcttaacgacggcatatggatcactagtattaacatcacgaacggcgaggt 45347845  T
Q  218 tgacgccacgcttaatgtggatccttagaagtccgaggaggtcttccatcaatgacttaccgctatctccccctccgttatgtgt 302  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45347844 tgacgccacgcttaatgcggatccttagaagtccgaggaggtcttccatcaatgacttaccgctatctccccctccgttatgtgt 45347760  T

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