View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11579_high_18 (Length: 292)
Name: NF11579_high_18
Description: NF11579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11579_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 26357789 - 26357948
Alignment:
| Q |
1 |
gatatcaaacatgtatgctagtaatatccaaatcactgtgttggatggactgagaagacaatttcaaatatatgccagaaacaactcccaggttaatcca |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26357789 |
gatatcaaacatgtaagctagtaatatccaaatcactgtgttggatggactgagaagacaatttcaaatatatgccagaaacaactcccaggttaatcca |
26357888 |
T |
|
| Q |
101 |
tccttcacaatgttatcataaagattctagagataaagatcaagcagcaaaataggttct |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26357889 |
tccttcacaatgttatcataaagattctagagataaagatcaagcagcaaaataggttct |
26357948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 6685007 - 6685166
Alignment:
| Q |
1 |
gatatcaaacatgtatgctagtaatatccaaatcactgtgttggatggactgagaagacaatttcaaatatatgccagaaacaactcccaggttaatcca |
100 |
Q |
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||||||| ||||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| |
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| T |
6685007 |
gatatcatacatgtaagctagtaatatccaaataactatgttgaatggactgagaagacaattttgaatatatgccaaaaacaactcccaagttaatcca |
6685106 |
T |
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| Q |
101 |
tccttcacaatgttatcataaagattctagagataaagatcaagcagcaaaataggttct |
160 |
Q |
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| T |
6685107 |
tacttcacaatgtcatcatgaagctcttagagatcaaaatcaaccagcaaaattggttct |
6685166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 219 - 273
Target Start/End: Complemental strand, 34753701 - 34753647
Alignment:
| Q |
219 |
tcctggatgtaaactctcctactaaccgctacaaacaacccgaaaacataagaac |
273 |
Q |
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| T |
34753701 |
tcctggatgtaaactctcctactaaccgctacaaacaacccgaaaacataagaac |
34753647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 30821982 - 30822069
Alignment:
| Q |
1 |
gatatcaaacatgtatgctagtaatatccaaatcactgtgttggatggactgagaagacaatttcaaatatatgccagaaacaactcc |
88 |
Q |
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||||||| ||||||| ||||||||||||||||| ||| ||||| ||||| |||||||||||||| ||||||||||||||| |||||| |
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| T |
30821982 |
gatatcatacatgtaagctagtaatatccaaataactatgttgaatggattgagaagacaattttgaatatatgccagaaaaaactcc |
30822069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 30812721 - 30812796
Alignment:
| Q |
2 |
atatcaaacatgtatgctagtaatatccaaatcactgtgttggatggactgagaagacaatttcaaatatatgcca |
77 |
Q |
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|||||| ||||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||| |||| |||||| |
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| T |
30812721 |
atatcatacatgtaagctagtaatatccaaataactatgttgaatggactgagaagacaattttgaataaatgcca |
30812796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 51759607 - 51759766
Alignment:
| Q |
1 |
gatatcaaacatgtatgctagtaatatccaaatcactgtgttggatggactgagaagacaatttcaaatatatgccagaaacaactcccaggttaatcca |
100 |
Q |
| |
|
||||||| ||||||| |||||||||||| |||| ||| ||||| ||||| |||||||||||||| ||||||| |||||||||||||| | ||||||||| |
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| T |
51759607 |
gatatcatacatgtaagctagtaatatctaaataactatgttgaatggattgagaagacaattttgaatatataccagaaacaactccgaagttaatcca |
51759706 |
T |
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| Q |
101 |
tccttcacaatgttatcataaagattctagagataaagatcaagcagcaaaataggttct |
160 |
Q |
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| ||||||||||| | || ||| || ||||||| || |||||||||||||||||||||| |
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| T |
51759707 |
tacttcacaatgtcacgatgaagcttttagagatcaaaatcaagcagcaaaataggttct |
51759766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 27810716 - 27810826
Alignment:
| Q |
1 |
gatatcaaacatgtatgcta--gtaatatccaaatcactgtgttggatggactgagaagacaatttcaaatatatgccagaaacaactcccaggttaatc |
98 |
Q |
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||||||| ||||||| |||| ||||||||||||| ||| ||||| |||||||||||| ||||||| |||||| |||||||| |||||||| ||||||| |
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| T |
27810716 |
gatatcatacatgtaagctatagtaatatccaaataactatgttgaatggactgagaatacaattttgaatataagccagaaaaaactcccaagttaatc |
27810815 |
T |
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| Q |
99 |
catccttcaca |
109 |
Q |
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| T |
27810816 |
catacttcaca |
27810826 |
T |
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