View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11579_high_21 (Length: 259)
Name: NF11579_high_21
Description: NF11579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11579_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 34872041 - 34871800
Alignment:
| Q |
1 |
gcaaacgatgtgggacttactttgaatgtgtgaagtccaaacaaacaacacggtttcaagccttcatcacctcctgtcttctccacaataacaaatcaca |
100 |
Q |
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| T |
34872041 |
gcaaacgatgtgggacttactttgaatgtgtgaagtccaaacaaacaacacggtttcaagccttcatcacctcctgtcttctccacaataacaaatcaca |
34871942 |
T |
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| Q |
101 |
acagcatcatcatcgaccccttcattccttaccatcttcttatttatccttcattgcagtattaggggtggtgttgtttgttctaaacgagcccaaacaa |
200 |
Q |
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||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
34871941 |
acaacatcatcatcgaccccttaattccttaccatcttcttatttatccttcattgcagtattaggggtggtgttgtttgttctaaatgagtccaaacaa |
34871842 |
T |
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| Q |
201 |
ctgtcatatatctaaattgaaactgtgacacattgatgtatt |
242 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34871841 |
ttgtcatatatcaaaattgaaactgtgacacattgatgtatt |
34871800 |
T |
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