View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11579_high_29 (Length: 211)
Name: NF11579_high_29
Description: NF11579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11579_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 9e-60; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 51 - 187
Target Start/End: Original strand, 9571533 - 9571669
Alignment:
| Q |
51 |
tgatacatcaacctttacaaaatcatgttagtgagataagatgggattacccatcatttatttattgatgagaaattacctagctagcacttaaaaatat |
150 |
Q |
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| T |
9571533 |
tgatacatcaacctttacaaaatcatgttagtgagataagatgggattacccatcatttatttaatgatgagaaattacctaggtagcacttaaaaatat |
9571632 |
T |
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| Q |
151 |
actttaggatcttatctcatgtagtgtgagacacttg |
187 |
Q |
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| T |
9571633 |
actttaggatcttatctcaacgagtgtgagacacttg |
9571669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 9563265 - 9563351
Alignment:
| Q |
1 |
ttctcatatttgagcatttggtgttgtgaaatccataagtatgatgagtttgatacatcaacctttacaaaatcatgttagtgagat |
87 |
Q |
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| T |
9563265 |
ttctcatatttgagcatttggtgctgtgaaatccataagtatgatgagtttgatacatcaacctttacaaaatcatgttagtaagat |
9563351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9571498 - 9571533
Alignment:
| Q |
1 |
ttctcatatttgagcatttggtgttgtgaaatccat |
36 |
Q |
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| T |
9571498 |
ttctcatatttgagcatttggtgttgtgaaatccat |
9571533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 9563390 - 9563459
Alignment:
| Q |
118 |
atgagaaattacctagctagcacttaaaaatatactttaggatcttatctcatgtagtgtgagacacttg |
187 |
Q |
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| T |
9563390 |
atgtgaaactacctagcaaacacttaataatatacgtttgaatcttatctcatcgagtgtgagacacttg |
9563459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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