View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11579_high_4 (Length: 659)
Name: NF11579_high_4
Description: NF11579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11579_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 559; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 20 - 647
Target Start/End: Complemental strand, 8555301 - 8554675
Alignment:
| Q |
20 |
tacgtgtcagcggcttcatcaatctgcagtcaacaacttattagtacagtataacttaccaagacaataacaacgaagcgaacaagaaaacaaattagta |
119 |
Q |
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| T |
8555301 |
tacgtgtcagcggcttcatcaatctgcagtcaacaacttattagtacagtataacttaccaagacaataacaacgaagctaacaagaaaacaaattagta |
8555202 |
T |
|
| Q |
120 |
gtatattacaattatctgtgtcggacgcccagctccatgtccagctttgcattcaattcgagcaattattgggtttgtctgcggacttttatctaggcca |
219 |
Q |
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| T |
8555201 |
gtatattacaattttctgtgtcggacgcccagctccatgtccagctttgcattcaattcgagcaattattgggttcgtctgcggacttttatctaggcta |
8555102 |
T |
|
| Q |
220 |
gtaacaaggacatactgcatggtctggtctgctcaatatttggatttggaatacaagttaaaagtttgcagcttccaaaataaattcataaattatggaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8555101 |
gtaacaaggacatactgcatggtctggtctgctcaatatttggatttggaatacaagttaaaagtttgcagcttccaaaataaattcataaattatggaa |
8555002 |
T |
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| Q |
320 |
agcatactaaccgctaacagcttcaatgaatgcaatggcacaacacgatcatcatgatcagctatcaatacaatagcattgttggtggatactgaattga |
419 |
Q |
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| T |
8555001 |
agcatactaaccgctaacagcttcaatgaatgcaatggcacaacacgatcatcatgatcagctatc-----aatagcattgttggtggatactgaattga |
8554907 |
T |
|
| Q |
420 |
cttatctggatgttgctcccatggtctccggacattatgcaatggtgagtacctaaaaca----acttaactattatcataagatatcacatcacatcac |
515 |
Q |
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| T |
8554906 |
cttatctggatgttgctcccatggtctccagacattatgcaatggtgagtacctaaaacaacttacttaactattatcataagatatcacatcacatcac |
8554807 |
T |
|
| Q |
516 |
aaatagtcccctacatcaaagtcttcaacattatagtttcaacttaatatttaatgacaggtttaaccaaactcacttgattagccaatgaaattcttcc |
615 |
Q |
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| T |
8554806 |
aaatagtcccctacatcaaagtctgcaaaattatagtttcaacttaatatttaatgacaggtttaaccaaactcacttgattagccaatgaaattcttcc |
8554707 |
T |
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| Q |
616 |
tccttgtcaggagaaccaaattctgatgtcca |
647 |
Q |
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| T |
8554706 |
tctttgtcaggagaaccaaattctgaagtcca |
8554675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 310 - 500
Target Start/End: Complemental strand, 8559533 - 8559349
Alignment:
| Q |
310 |
aattatggaaagcatactaaccgctaacagcttcaatgaatgcaatggcacaacacgatcatcatgatcagctatcaatacaatagcattgttggtggat |
409 |
Q |
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| T |
8559533 |
aattatgggaagcagacaaaccgccaatagcttcaatgaatgtaatggcacaacacgatcatcatgatcagctgt-----caatagcattgttgatgggt |
8559439 |
T |
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| Q |
410 |
actgaattgacttatctggatgttgctcccatggtctccggacattatgcaatggtgagtacctaaaacaacttaactattatcataagat |
500 |
Q |
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| T |
8559438 |
actgaatcgacttatctggatgctgttcccatggtctccggacattatgcaatggtgagtacctgaaacaccat-agtattatcataagat |
8559349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 122 - 245
Target Start/End: Complemental strand, 8559739 - 8559616
Alignment:
| Q |
122 |
atattacaattatctgtgtcggacgcccagctccatgtccagctttgcattcaattcgagcaattattgggtttgtctgcggacttttatctaggccagt |
221 |
Q |
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| T |
8559739 |
atattacagttttctgtgtcggacgcccagctccatgtccagccttgcattcaattcgagcaattattgggttcgtctggggacttttatccaggctagt |
8559640 |
T |
|
| Q |
222 |
aacaaggacatactgcatggtctg |
245 |
Q |
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||||||||||||||||| |||||| |
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| T |
8559639 |
aacaaggacatactgcaaggtctg |
8559616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 550 - 647
Target Start/End: Complemental strand, 8559263 - 8559166
Alignment:
| Q |
550 |
agtttcaacttaatatttaatgacaggtttaaccaaactcacttgattagccaatgaaattcttcctccttgtcaggagaaccaaattctgatgtcca |
647 |
Q |
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||||||| |||| ||||||| || ||||||||| ||||||||||||||||||||||||||||||| |||||||||| | | ||||| ||||| ||||| |
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| T |
8559263 |
agtttcatcttactatttaacgataggtttaacgaaactcacttgattagccaatgaaattcttcttccttgtcagaacagccaaaatctgaggtcca |
8559166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 8559833 - 8559800
Alignment:
| Q |
25 |
gtcagcggcttcatcaatctgcagtcaacaactt |
58 |
Q |
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| T |
8559833 |
gtcagcggcttcatcaatctgcagtcaacaactt |
8559800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 325 - 476
Target Start/End: Complemental strand, 53740427 - 53740281
Alignment:
| Q |
325 |
actaaccgctaacagcttcaatgaatgcaatggcacaacacgatcatcatgatcagctatcaatacaatagcattgttggtggatactgaattgacttat |
424 |
Q |
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| T |
53740427 |
actaaccgccaatagcttcaatgagtgtagtggcacaactcgatcatcatgatctgccgttaa--caa---catagttgatgggtattgaattgacttgt |
53740333 |
T |
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| Q |
425 |
ctggatgttgctcccatggtctccggacattatgcaatggtgagtacctaaa |
476 |
Q |
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| T |
53740332 |
caggatgctgttcccaaggtcgccggacattatgcaatggtgagtacctaaa |
53740281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 53740787 - 53740703
Alignment:
| Q |
125 |
ttacaattatctgtgtcggacgcccagctccatgtccagctttgcattcaattcgagcaattattgggtttgtctgcggactttt |
209 |
Q |
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|||| ||| ||| ||| ||||| || |||||||||||||||||||| ||||| ||| ||||||| |||||||| || |||||||| |
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| T |
53740787 |
ttaccattttctttgttggacgacccgctccatgtccagctttgcagtcaatgcgaccaattatagggtttgtttggggactttt |
53740703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 620
Target Start/End: Complemental strand, 53739171 - 53739135
Alignment:
| Q |
584 |
aaactcacttgattagccaatgaaattcttcctcctt |
620 |
Q |
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||||||||||||||||||||||||| ||||||||||| |
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| T |
53739171 |
aaactcacttgattagccaatgaaactcttcctcctt |
53739135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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