View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11579_high_7 (Length: 433)
Name: NF11579_high_7
Description: NF11579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11579_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 50504830 - 50505248
Alignment:
| Q |
1 |
cccttctcatttttcatcaaactatatattgtttacacacttcatagaattctgcatgaggctgataacctcccttctataagttacccgttagtgtatg |
100 |
Q |
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| T |
50504830 |
cccttctcatttttcatcaaactatatattgtttacacacttcatagaattctgcatgaggctgataacctcccttctataagttacccgttagtgtatg |
50504929 |
T |
|
| Q |
101 |
catgccctcgtggataaaatagaagagccacaataaaactttgaatacaaaagtctaaatatataacacttctcaaaatttcaccacaattgattgacgc |
200 |
Q |
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| T |
50504930 |
catgccctcgtggataaaatagaagagccacaataaaactttgaatacaaaagtctaaatatataacacttctcaaaatttcaccacaattgattgacgc |
50505029 |
T |
|
| Q |
201 |
acaatctttcccattttaacttagtctagaaactgcagggcaactgattatttgaatagtgctttagggggcataaactacgaaaaatatcatacgacac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
50505030 |
acaatctttcccattttaacttagtctagaaactgcagggcaactgattatttggatagtgctttagggggcagaaactacgaaaaatatcatacgacac |
50505129 |
T |
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| Q |
301 |
tacttgctgagaacgtaactggtagtcattttggtacgtgcacattcaatacataaagcatgcaactctcaatgtaacaattcatgctccaaccgtggaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50505130 |
tacttgctgagaacgtaactggtagtcattttggtacatgcacattcaatacataaagcatgcaactctcaaagtaacaattcatgctccaaccgtggaa |
50505229 |
T |
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| Q |
401 |
gctggagaacgagaaaaat |
419 |
Q |
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| T |
50505230 |
gctggagaacgagaaaaat |
50505248 |
T |
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