View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11579_low_11 (Length: 416)
Name: NF11579_low_11
Description: NF11579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11579_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 25703305 - 25702907
Alignment:
| Q |
1 |
aaagaacttaaagattataccggttttaaatcaagtagtggtttggtcaaaaccattgttatatccgaaggaaacatcttcaccggtcatcaagatggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25703305 |
aaagaacttaaagattataccggttttaaatcaagtagtggtttggtcaaatccattgttatatccgaaggaaacatcttcaccggtcatcaagatggaa |
25703206 |
T |
|
| Q |
101 |
aaatcagagtttggaaaatttcttcaaaaaattctagaaatcataagcgtattggaagcttaccaactttcaaagactatgtcaaaagctcgatgaatcc |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25703205 |
aaatcagggtttggaaaatttcttcaaaaaattctagaaatcataagcgtattggaagcttaccaactttcaaagactatgtcaaaagctcgatgaatcc |
25703106 |
T |
|
| Q |
201 |
aaagaactacgtagaagtccggcgacggagaaacacagtgaaggtgaagcatttcgacgctgtttcgagtctgagtttggaccaagaagaagggttattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
25703105 |
aaagaactacgtagaagtccggcgacggagaaacaccgtgaaggtgaagcatttcgacgctgtttcgagtctgagtttggatcaagaagaagggttgttg |
25703006 |
T |
|
| Q |
301 |
tattcaggttcgtgggataaaactctcaaagtttggcgcgttacggatttcaagtgtatggaatcgattatagctcatgatgatgcagtgaacgctgtg |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25703005 |
tattcaggttcgtgggataaaactctcaaagtttggcgcgttacggatttcaagtgtatggaatcgattatagctcatgatgatgcagtgaacgctgtg |
25702907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University