View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11579_low_12 (Length: 409)
Name: NF11579_low_12
Description: NF11579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11579_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 5 - 394
Target Start/End: Original strand, 26936841 - 26937229
Alignment:
| Q |
5 |
aaataaagaaaaagatacagaaatcatttattttaacatgtatacacagttttggttggttccaatagtcgtagatcatccaagtaattgaaaattcttg |
104 |
Q |
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| T |
26936841 |
aaataaagaaaaagatacagaaaccatttattttaacatgtatacacagttttggttggttccaatattcatagatcatccaagtaattgaaaattcttg |
26936940 |
T |
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| Q |
105 |
atggtgacaaaat--gctgcatattttcagcttatacaaaacttaccaatgatgaaaaaggatttgtggatattttttaaatcagttgatttcttctagt |
202 |
Q |
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| T |
26936941 |
acggtgacaaaatatgctgcatattttcagcttatacaaaacttatcaatgatgaaaaaggatttgtggatattttttaaattagttgatttcttctagt |
26937040 |
T |
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| Q |
203 |
taactatgctagttcattctctggttgagccattcaacctatgcagtagacacttccgattaaagatgtgttggtgactgtctgacacattccgcctccg |
302 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26937041 |
taactatgctagttgattctctggttgagccattcaacctatgcagtagacacttccgattaaagatgtgttggtgactgtatgacacattccgcctccg |
26937140 |
T |
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| Q |
303 |
gtgtcgtagagtgacacatgtattgacacattcaaactctttttcttcttcaaattatcactgatatctacatattagtatttgtgtcgtat |
394 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| |||||||||||||||||| |
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| T |
26937141 |
gtgtcgtacagtgacacatgtattgacacattcaaactcttt---ttcttcaaattattactgatatttacatgttagtatttgtgtcgtat |
26937229 |
T |
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