View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11579_low_15 (Length: 356)

Name: NF11579_low_15
Description: NF11579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11579_low_15
NF11579_low_15
[»] chr1 (10 HSPs)
chr1 (74-234)||(40524862-40525022)
chr1 (75-230)||(45025317-45025472)
chr1 (75-230)||(24205539-24205694)
chr1 (75-222)||(24210321-24210468)
chr1 (75-222)||(45034949-45035096)
chr1 (129-230)||(45030205-45030306)
chr1 (73-152)||(19326856-19326934)
chr1 (75-186)||(18473141-18473251)
chr1 (134-198)||(18473045-18473109)
chr1 (104-150)||(19330336-19330383)
[»] chr3 (3 HSPs)
chr3 (71-230)||(14031185-14031344)
chr3 (72-220)||(29073891-29074039)
chr3 (118-220)||(14030441-14030544)
[»] chr4 (2 HSPs)
chr4 (73-234)||(53386260-53386421)
chr4 (73-152)||(27442643-27442721)
[»] scaffold0655 (2 HSPs)
scaffold0655 (73-222)||(4118-4265)
scaffold0655 (66-207)||(6188-6328)
[»] scaffold0134 (3 HSPs)
scaffold0134 (73-230)||(20069-20226)
scaffold0134 (73-223)||(41097-41247)
scaffold0134 (232-335)||(40293-40398)
[»] chr2 (11 HSPs)
chr2 (73-175)||(40623373-40623475)
chr2 (90-222)||(1586041-1586172)
chr2 (79-199)||(14914102-14914221)
chr2 (104-230)||(24179384-24179508)
chr2 (104-160)||(14913650-14913706)
chr2 (95-183)||(40619995-40620084)
chr2 (105-192)||(14922356-14922440)
chr2 (120-186)||(16156799-16156864)
chr2 (79-156)||(16177083-16177160)
chr2 (73-151)||(39959415-39959492)
chr2 (120-164)||(16147385-16147429)
[»] chr6 (6 HSPs)
chr6 (72-232)||(16589939-16590100)
chr6 (72-232)||(16605280-16605441)
chr6 (75-230)||(33161553-33161708)
chr6 (75-222)||(33166339-33166486)
chr6 (73-222)||(16594946-16595096)
chr6 (248-317)||(16594160-16594229)
[»] scaffold0009 (3 HSPs)
scaffold0009 (72-230)||(27296-27456)
scaffold0009 (73-222)||(32179-32330)
scaffold0009 (248-317)||(31393-31462)
[»] chr8 (9 HSPs)
chr8 (73-222)||(40270211-40270360)
chr8 (248-317)||(40271077-40271146)
chr8 (104-152)||(44206259-44206307)
chr8 (75-152)||(19177405-19177481)
chr8 (73-151)||(40275136-40275214)
chr8 (73-152)||(11685992-11686070)
chr8 (191-230)||(4863769-4863808)
chr8 (191-230)||(31337940-31337979)
chr8 (119-152)||(31343702-31343735)
[»] chr5 (2 HSPs)
chr5 (104-150)||(18152282-18152328)
chr5 (259-317)||(1546590-1546648)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 74 - 234
Target Start/End: Complemental strand, 40525022 - 40524862
Alignment:
Q  74 gatagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaatagttgta 173  Q
    |||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  40525022 gatagaatagaatattttgtcataattgactataattattttcctataattatgttgtatcataattagatagttgaccaaacgttacacaatagttcta 40524923  T
Q  174 tatattctattcatatgaatgagaaacgcaagcattccattatcttacatggtatcagagc 234  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  40524922 tatattctattcagatgaatgagaaacggaagcattccattatcttacatggtatcagagc 40524862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 75 - 230
Target Start/End: Original strand, 45025317 - 45025472
Alignment:
Q  75 atagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaatagttgtat 174  Q
    |||||||||||||||  || || |||| |||| |||| || | ||||| || | ||||||||||||||  |||||| || ||||||||||||||||||||    
T  45025317 atagaatagaatattcggtcattattggctattattagttccctgtaaataggctgtatcataattagtaagttgatcagacgttacacaatagttgtat 45025416  T
Q  175 atattctattcatatgaatgagaaacgcaagcattccattatcttacatggtatca 230  Q
    |||||||||||| || ||||||||| |||||||||   ||||||||||||||||||    
T  45025417 atattctattcagatcaatgagaaaggcaagcattttgttatcttacatggtatca 45025472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 75 - 230
Target Start/End: Original strand, 24205539 - 24205694
Alignment:
Q  75 atagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaatagttgtat 174  Q
    |||||||||||||||  || || |||| |||| |||| || | ||||| || | ||||||||||||||  ||||||||| |||||| |||||||||||||    
T  24205539 atagaatagaatattcggtcattattggctattattagttccctgtaaataggctgtatcataattagtaagttgaccagacgttatacaatagttgtat 24205638  T
Q  175 atattctattcatatgaatgagaaacgcaagcattccattatcttacatggtatca 230  Q
    |||||||||||| || ||||||||| |||||||||   ||||||||||| ||||||    
T  24205639 atattctattcagatcaatgagaaaggcaagcattttgttatcttacattgtatca 24205694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 24210321 - 24210468
Alignment:
Q  75 atagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaatagttgtat 174  Q
    |||||||||||||||  || || |||| |||| |||| || | ||||| || | ||||||||||||||  ||||||||| ||||||||||||||||||||    
T  24210321 atagaatagaatattcggtcattattggctattattagttccctgtaaataggctgtatcataattagtaagttgaccagacgttacacaatagttgtat 24210420  T
Q  175 atattctattcatatgaatgagaaacgcaagcattccattatcttaca 222  Q
    |||||||||||| || ||||||||| |||||||||   ||||||||||    
T  24210421 atattctattcagatcaatgagaaaggcaagcattttgttatcttaca 24210468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 45034949 - 45035096
Alignment:
Q  75 atagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaatagttgtat 174  Q
    |||||||||||||||  || || |||| |||| |||| || | ||||| || | ||||||||||||||  ||||||||| ||||||||||| ||||||||    
T  45034949 atagaatagaatattcggtcattattggctattattagttccctgtaaataggctgtatcataattagtaagttgaccagacgttacacaacagttgtat 45035048  T
Q  175 atattctattcatatgaatgagaaacgcaagcattccattatcttaca 222  Q
    |||||||||||| || ||||||||| |||||||||   ||||||||||    
T  45035049 atattctattcagatcaatgagaaaggcaagcattttgttatcttaca 45035096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 45030205 - 45030306
Alignment:
Q  129 tgtatcataattagatagttgaccaaacgttacacaatagttgtatatattctattcatatgaatgagaaacgcaagcattccattatcttacatggtat 228  Q
    ||||||||||||||  |||||| || ||||||||||| |||||||||||||||||| | || ||||||||| |||||||||   ||||||||||||||||    
T  45030205 tgtatcataattagtaagttgatcagacgttacacaacagttgtatatattctatttagatcaatgagaaaggcaagcattttgttatcttacatggtat 45030304  T
Q  229 ca 230  Q
    ||    
T  45030305 ca 45030306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 19326856 - 19326934
Alignment:
Q  73 tgatagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgacc 152  Q
    |||||||||||||||||  || ||||||   ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19326856 tgatagaatagaatatta-gtcataattagttataattattttcctgtaattatgttgtatcataattagatagttgacc 19326934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 186
Target Start/End: Complemental strand, 18473251 - 18473141
Alignment:
Q  75 atagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaatagttgtat 174  Q
    |||||||||||||||  || || ||||||||| |||| || || |||| ||   ||||||||||||||  |||||| |||||||||||||||||||||||    
T  18473251 atagaatagaatattcggtcattattgactattattagttcct-gtaaatagactgtatcataattagtaagttgatcaaacgttacacaatagttgtat 18473153  T
Q  175 atattctattca 186  Q
     |||||||||||    
T  18473152 gtattctattca 18473141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 18473045 - 18473109
Alignment:
Q  134 cataattagatagttgaccaaacgttacacaatagttgtatatattctattcatatgaatgagaa 198  Q
    |||||||||  ||||||||| ||||||||||| |||||||||||||||||||| || ||||||||    
T  18473045 cataattagtaagttgaccagacgttacacaacagttgtatatattctattcagatcaatgagaa 18473109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 19330336 - 19330383
Alignment:
Q  104 tataattattttct-tgtaattatgttgtatcataattagatagttga 150  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||||    
T  19330336 tataattattttccctgtaattatgttgtatcctaattagatagttga 19330383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 9e-52; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 71 - 230
Target Start/End: Complemental strand, 14031344 - 14031185
Alignment:
Q  71 attgatagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaatagtt 170  Q
    ||||||||||||||||||||||||||||||| || || |||||||| | |||||||||||||||||||||||||| |||| ||||  ||||||| |||||    
T  14031344 attgatagaatagaatattttgttataattggctctatttattttcctataattatgttgtatcataattagataattgatcaaatattacacagtagtt 14031245  T
Q  171 gtatatattctattcatatgaatgagaaacgcaagcattccattatcttacatggtatca 230  Q
    |||||||||||||||| |||||||||||||  |||||||||||||||||| |||||||||    
T  14031244 gtatatattctattcagatgaatgagaaacaaaagcattccattatcttatatggtatca 14031185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 29074039 - 29073891
Alignment:
Q  72 ttgatagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaatagttg 171  Q
    |||||| |||||| |||||||| ||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||| ||||    
T  29074039 ttgatataatagattattttgtcataattggctataattattttcctgtaattaagttgtatcataattagatagttgaccaaacattacacaattgttg 29073940  T
Q  172 tatatattctattcatatgaatgagaaacgcaagcattccattatctta 220  Q
    ||||||||||||||| |||||||||||||  |||||||||||| |||||    
T  29073939 tatatattctattcagatgaatgagaaacaaaagcattccattgtctta 29073891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 14030441 - 14030544
Alignment:
Q  118 tgtaattatgttgtatcataattagatagttgaccaaacgttacacaatagttgtatatattctattcatatgaatgagaaacgcaagca-ttccattat 216  Q
    ||||||||||||||||| |||||||||||||||| ||| |||||||||||||| ||||| ||||||||| ||||||||||||| |||||| |||||||||    
T  14030441 tgtaattatgttgtatcttaattagatagttgactaaatgttacacaatagttctatattttctattcagatgaatgagaaacacaagcatttccattat 14030540  T
Q  217 ctta 220  Q
    ||||    
T  14030541 ctta 14030544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 73 - 234
Target Start/End: Complemental strand, 53386421 - 53386260
Alignment:
Q  73 tgatagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaatagttgt 172  Q
    ||||||| || |||||||||||||||||| || |||||| |||| ||||||||| ||||||||||| ||||||||||||||||||||||| | |||||||    
T  53386421 tgatagagtataatattttgttataattggctgtaattagtttcatgtaattatattgtatcataactagatagttgaccaaacgttacatagtagttgt 53386322  T
Q  173 atatattctattcatatgaatgagaaacgcaagcattccattatcttacatggtatcagagc 234  Q
    |||||||||||||| ||| |||||||| | || ||||||||||||| |||||||||||||||    
T  53386321 atatattctattcacatggatgagaaaagtaatcattccattatctaacatggtatcagagc 53386260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 27442721 - 27442643
Alignment:
Q  73 tgatagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgacc 152  Q
    |||||||||||||||||  || ||||||   ||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  27442721 tgatagaatagaatatta-gtcataattagttataattattttcctgtaattatgctgtatcataattagatagttgacc 27442643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 4265 - 4118
Alignment:
Q  73 tgatagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaatagttgt 172  Q
    |||||||||||||||||| || ||||||| |||||||||||| | ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  4265 tgatagaatagaatattt-gtcataattggctataattatttccctgtaattatgttgtatcataagtagatagttgactaaacgttacacaatagttgt 4167  T
Q  173 atatattctattcatatgaatgagaaacgcaagcattccattatcttaca 222  Q
    |||||||| ||||| |||||| |||||| |||||||||||||||| ||||    
T  4166 atatattc-attcagatgaataagaaacacaagcattccattatcctaca 4118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 6328 - 6188
Alignment:
Q  66 atattattgatagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaa 165  Q
    |||||| |||||||||||||||||| || ||||||| |||||||||||| | ||||||||||||||||||||| |||||||||||| |||||||||||||    
T  6328 atattactgatagaatagaatattt-gtaataattggctataattatttccctgtaattatgttgtatcataagtagatagttgactaaacgttacacaa 6230  T
Q  166 tagttgtatatattctattcatatgaatgagaaacgcaagca 207  Q
    |||||||||||||||| |||| ||||||||||||| ||||||    
T  6229 tagttgtatatattcttttcagatgaatgagaaacacaagca 6188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 73 - 230
Target Start/End: Original strand, 20069 - 20226
Alignment:
Q  73 tgatagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaa-cgttacacaatagttg 171  Q
    |||||||||||||||||||||| |||||    ||||||| |||| | |||||||||||||||||||||||||||||||||||| ||||||||| | | ||    
T  20069 tgatagaatagaatattttgttgtaattagtcataattagtttcgtataattatgttgtatcataattagatagttgaccaaaacgttacacatt-gatg 20167  T
Q  172 tatatattctattcatatgaatgagaaacgcaagcattccattatcttacatggtatca 230  Q
    ||||||||||||||| ||||||||||||| || |||||| |||||||||||||||||||    
T  20168 tatatattctattcagatgaatgagaaactcaggcattctattatcttacatggtatca 20226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 41097 - 41247
Alignment:
Q  73 tgatagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgacc-aaacgttacacaatagttg 171  Q
    ||||||||||||||||||| || |||||    ||||||| |||| | ||||||||||||||||||||||||||||||||| ||||||||||| || | ||    
T  41097 tgatagaatagaatattttattgtaattagtcataattagtttcctataattatgttgtatcataattagatagttgaccaaaacgttacac-attggtg 41195  T
Q  172 tatatattctattcatatgaatgagaaacgcaagcattccattatcttacat 223  Q
    ||||||||||||||| ||||||||||||| || |||||| ||||||||||||    
T  41196 tatatattctattcagatgaatgagaaactcaggcattctattatcttacat 41247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 232 - 335
Target Start/End: Original strand, 40293 - 40398
Alignment:
Q  232 agcacctatgctta--aaatcattgaacgtgctggaatgacatcctgcaaaccttcggccactcctgttgacaccaagcagaaactcaacactttacctg 329  Q
    |||||||||||||   |||||||||||||||| | |||||||||||||| | | || ||||| ||||| ||||||||||||||||||| ||||| | |||    
T  40293 agcacctatgcttctgaaatcattgaacgtgccgaaatgacatcctgcagatcatctgccacccctgtagacaccaagcagaaactcagcacttcatctg 40392  T
Q  330 gcactc 335  Q
    ||||||    
T  40393 gcactc 40398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 73 - 175
Target Start/End: Original strand, 40623373 - 40623475
Alignment:
Q  73 tgatagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaatagttgt 172  Q
    |||||||||| |||||||||| ||||||||||||||||| |||| |||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||    
T  40623373 tgatagaatataatattttgtcataattgactataattagtttcatgtaattatgatgtatcataattagatagtcgaccaaacgttacacaatacttgt 40623472  T
Q  173 ata 175  Q
    |||    
T  40623473 ata 40623475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 90 - 222
Target Start/End: Complemental strand, 1586172 - 1586041
Alignment:
Q  90 ttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaatagttgtatatattctattcatat 189  Q
    |||| ||||||  |||||||||||| | | ||||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||  ||    
T  1586172 ttgtcataattagctataattatttccct-taattatattgtatcataattaaatagttgaccaaacgttacacaacagttatatatattctattcggat 1586074  T
Q  190 gaatgagaaacgcaagcattccattatcttaca 222  Q
    |||||||||||||||  ||||||||||||||||    
T  1586073 gaatgagaaacgcaaaaattccattatcttaca 1586041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 14914102 - 14914221
Alignment:
Q  79 aatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaatagttgtatatat 178  Q
    ||||||||||||||| ||||||    |||| || |||| ||||||||| ||||||||||||||||||||||| |||||  |||||||| | |||||||||    
T  14914102 aatagaatattttgtaataattagtcataaatactttcctgtaattatattgtatcataattagatagttgatcaaacactacacaat-gatgtatatat 14914200  T
Q  179 tctattcatatgaatgagaaa 199  Q
    |||||||| || |||||||||    
T  14914201 tctattcacattaatgagaaa 14914221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 230
Target Start/End: Complemental strand, 24179508 - 24179384
Alignment:
Q  104 tataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaatagttgtatatattctattcatatgaatgag-aaacgc 202  Q
    ||||| || |||| |||||||||||||||||||||||| | |||||||||||| |||||||||   ||||||||||||||  | ||||||||| ||| |     
T  24179508 tataaatagtttcctgtaattatgttgtatcataattatagagttgaccaaacattacacaat-catgtatatattctat--acatgaatgagaaaaggt 24179412  T
Q  203 aagcattccattatcttacatggtatca 230  Q
    || |||||||||||||||||||||||||    
T  24179411 aaacattccattatcttacatggtatca 24179384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 14913650 - 14913706
Alignment:
Q  104 tataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgtta 160  Q
    |||||||| ||| ||||||||||||||||||||||||| |||||||| |||||||||    
T  14913650 tataattagttttttgtaattatgttgtatcataattaaatagttgatcaaacgtta 14913706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 40620084 - 40619995
Alignment:
Q  95 ataattgactataattattttcttgtaattatgttgtatcataatta---gatagttgaccaaacgttacacaatagttgtatatattctat 183  Q
    ||||||| ||||||||| |||| | |||||||||| ||||||||| |   ||||||||| ||||||||||||||||||||||| ||||||||    
T  40620084 ataattggctataattagtttcatataattatgtt-tatcataataataagatagttgatcaaacgttacacaatagttgtat-tattctat 40619995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 14922356 - 14922440
Alignment:
Q  105 ataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaatagttgtatatattctattcatatgaa 192  Q
    ||||||| |||| |||||||||  ||||||||||||  |||||||| ||||| ||||||| | | |||||||||||||||||||||||    
T  14922356 ataattagtttcgtgtaattat--tgtatcataattcaatagttgatcaaacattacacatt-gatgtatatattctattcatatgaa 14922440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 16156799 - 16156864
Alignment:
Q  120 taattatgttgtatcataattagatagttgaccaaacgttacacaatagttgtatatattctattca 186  Q
    |||||||| | |||||||||||||||||||| ||||| |||||| || | |||||||||||||||||    
T  16156799 taattatgctatatcataattagatagttgatcaaactttacac-attgatgtatatattctattca 16156864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 156
Target Start/End: Original strand, 16177083 - 16177160
Alignment:
Q  79 aatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaac 156  Q
    ||||||||||||||| ||||||   |||||||| ||| ||||||||||| | ||||| ||||| |||||||| |||||    
T  16177083 aatagaatattttgtaataattagttataattagttttttgtaattatggtatatcaaaattaaatagttgatcaaac 16177160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 39959415 - 39959492
Alignment:
Q  73 tgatagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgac 151  Q
    |||||||||||||||||| || || | | | |||||| ||| |  |||||||||| |||||||||||||||||||||||    
T  39959415 tgatagaatagaatattt-gtcatgactaattataatgattattctgtaattatgatgtatcataattagatagttgac 39959492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 16147385 - 16147429
Alignment:
Q  120 taattatgttgtatcataattagatagttgaccaaacgttacaca 164  Q
    |||||||| | |||||||||||||||||||| ||||| |||||||    
T  16147385 taattatgctatatcataattagatagttgatcaaactttacaca 16147429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 72 - 232
Target Start/End: Original strand, 16589939 - 16590100
Alignment:
Q  72 ttgatagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaatagttg 171  Q
    ||||||||||||||||||||||||| |||    |||| || |||| | |||||||| ||||||||||||||||||||||||||||||||||| || ||||    
T  16589939 ttgatagaatagaatattttgttattattagtcataagtagtttcctataattatgctgtatcataattagatagttgaccaaacgttacac-attgttg 16590037  T
Q  172 --tatatattctattcatatgaatgagaaacgcaagcattccattatcttacatggtatcaga 232  Q
      ||||||||||| ||| || |||||||||  ||  |||||||||||||||||||||||||||    
T  16590038 tatatatattctactcagatcaatgagaaatccattcattccattatcttacatggtatcaga 16590100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 72 - 232
Target Start/End: Complemental strand, 16605441 - 16605280
Alignment:
Q  72 ttgatagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaatagttg 171  Q
    ||||||||||||||||||||||||| |||    |||| || |||| | |||||||| ||||||||||||||||||||||||||||||||||| || ||||    
T  16605441 ttgatagaatagaatattttgttattattagtcataagtagtttcctataattatgctgtatcataattagatagttgaccaaacgttacac-attgttg 16605343  T
Q  172 --tatatattctattcatatgaatgagaaacgcaagcattccattatcttacatggtatcaga 232  Q
      ||||||||||| ||| || |||||||||  ||  |||||||||||||||||||||||||||    
T  16605342 tatatatattctactcagatcaatgagaaatccattcattccattatcttacatggtatcaga 16605280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 75 - 230
Target Start/End: Original strand, 33161553 - 33161708
Alignment:
Q  75 atagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaatagttgtat 174  Q
    |||||||| ||||||  || || |||| |||| |||| || | ||||| || | ||||||||||||||  ||||||||| ||||||||||||||||||||    
T  33161553 atagaatataatattcggtcattattggctattattagttccctgtaaataggctgtatcataattagtaagttgaccagacgttacacaatagttgtat 33161652  T
Q  175 atattctattcatatgaatgagaaacgcaagcattccattatcttacatggtatca 230  Q
    |||||||||||| || ||||||||| |||||||||   ||||||||||||||||||    
T  33161653 atattctattcagatcaatgagaaaggcaagcattttgttatcttacatggtatca 33161708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 33166339 - 33166486
Alignment:
Q  75 atagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaatagttgtat 174  Q
    |||||||||||||||  || || |||| |||| |||| || | ||||| || ||||||||||||||||  ||||||| | ||||||||||||||||||||    
T  33166339 atagaatagaatattcggtcattattggctattattagttccctgtaaataggttgtatcataattagtaagttgactagacgttacacaatagttgtat 33166438  T
Q  175 atattctattcatatgaatgagaaacgcaagcattccattatcttaca 222  Q
    |||||||||||| || ||||||||| |||||||||   ||||||||||    
T  33166439 atattctattcagatcaatgagaaaggcaagcattttgttatcttaca 33166486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 16594946 - 16595096
Alignment:
Q  73 tgatagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaatagttg- 171  Q
    |||||||||||||||||||||||| |||    |||| || |||| | |||||||| | ||||||||||||||||||||||||||||||||| || ||||     
T  16594946 tgatagaatagaatattttgttattattagtcataagtagtttcctataattatgctatatcataattagatagttgaccaaacgttacac-attgttgt 16595044  T
Q  172 -tatatattctattcatatgaatgagaaacgcaagcattccattatcttaca 222  Q
     ||||||||||| ||| || |||||||||  ||  |||||||||||||||||    
T  16595045 atatatattctactcagatcaatgagaaatccattcattccattatcttaca 16595096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 317
Target Start/End: Original strand, 16594160 - 16594229
Alignment:
Q  248 atcattgaacgtgctggaatgacatcctgcaaaccttcggccactcctgttgacaccaagcagaaactca 317  Q
    ||||||||||||||| | ||||| || || ||||| ||  ||||||||||||||||||||||||||||||    
T  16594160 atcattgaacgtgctagcatgacttcttgtaaaccatcaaccactcctgttgacaccaagcagaaactca 16594229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 72 - 230
Target Start/End: Original strand, 27296 - 27456
Alignment:
Q  72 ttgatagaata-gaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaat-agt 169  Q
    ||||||||||| |||||||||||| |||||    ||||||| |||| | |||||||||||||||||||||||||||||||| ||| || ||||| | |      
T  27296 ttgatagaataagaatattttgttgtaattagtcataattagtttcctataattatgttgtatcataattagatagttgacaaaatgtcacacattgatg 27395  T
Q  170 tgtatatattctattcatatgaatgagaaacgcaagcattccattatcttacatggtatca 230  Q
    | ||||||||||||||| || |||||||||  ||| |||||||| ||||||||||||||||    
T  27396 tatatatattctattcagatcaatgagaaagccaaacattccataatcttacatggtatca 27456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 32179 - 32330
Alignment:
Q  73 tgatagaata-gaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaat-agtt 170  Q
    |||||||||| |||||||||||| |||||    ||||||| |||| | |||||||||||||||||||||||||||||||| ||| || ||||| | |  |    
T  32179 tgatagaataagaatattttgttgtaattagtcataattagtttcctataattatgttgtatcataattagatagttgacaaaatgtcacacattgatgt 32278  T
Q  171 gtatatattctattcatatgaatgagaaacgcaagcattccattatcttaca 222  Q
     ||||||||||||||| || |||||||||  |||| ||||||| ||||||||    
T  32279 atatatattctattcagatcaatgagaaagccaagtattccataatcttaca 32330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 248 - 317
Target Start/End: Original strand, 31393 - 31462
Alignment:
Q  248 atcattgaacgtgctggaatgacatcctgcaaaccttcggccactcctgttgacaccaagcagaaactca 317  Q
    |||||||||||| |||| ||| | ||||| |||||||| |||||||||||||||||||||||||||||||    
T  31393 atcattgaacgtactggcatggcgtcctgtaaaccttcagccactcctgttgacaccaagcagaaactca 31462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 40270360 - 40270211
Alignment:
Q  73 tgatagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgaccaaacgttacacaat-agttg 171  Q
    |||||||||||||||||||||| |||||    ||||||| |||| | |||||| ||||||||||||||||||||||||| ||| || ||||  | |  |     
T  40270360 tgatagaatagaatattttgttgtaattagtcataattagtttcctataattaggttgtatcataattagatagttgacaaaaggtcacactttgatgta 40270261  T
Q  172 tatatattctattcatatgaatgagaaacgcaagcattccattatcttaca 222  Q
    ||||||| ||||||| || ||||||||| | |||||||||||||| |||||    
T  40270260 tatatatgctattcaaatcaatgagaaa-gtaagcattccattatgttaca 40270211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 248 - 317
Target Start/End: Complemental strand, 40271146 - 40271077
Alignment:
Q  248 atcattgaacgtgctggaatgacatcctgcaaaccttcggccactcctgttgacaccaagcagaaactca 317  Q
    ||||||||||||| ||| ||||| || || ||||| ||||||||||||||||||||||||||||||||||    
T  40271146 atcattgaacgtgttggcatgacttcttgtaaaccatcggccactcctgttgacaccaagcagaaactca 40271077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 44206307 - 44206259
Alignment:
Q  104 tataattattttcttgtaattatgttgtatcataattagatagttgacc 152  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44206307 tataattattttcctgtaattatgttgtatcataattagatagttgacc 44206259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 19177405 - 19177481
Alignment:
Q  75 atagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgacc 152  Q
    |||||||||||||||  || ||||||   ||||||||||||| | |||||||||||||||||||||||||||||||||    
T  19177405 atagaatagaatatta-gtcataattagttataattattttcctctaattatgttgtatcataattagatagttgacc 19177481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 40275214 - 40275136
Alignment:
Q  73 tgatagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgac 151  Q
    |||||||||||||||||||||| |||||     |||||| |||| | |||||| |||||||||||||||||||||||||    
T  40275214 tgatagaatagaatattttgttgtaattagtcctaattagtttcctataattaggttgtatcataattagatagttgac 40275136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 11686070 - 11685992
Alignment:
Q  73 tgatagaatagaatattttgttataattgactataattattttcttgtaattatgttgtatcataattagatagttgacc 152  Q
    |||||||||||||||||| || ||||||   | |||| |||| | ||||||||||||||| |||||||||||||||||||    
T  11686070 tgatagaatagaatattt-gtcataattagttttaatgatttccctgtaattatgttgtaacataattagatagttgacc 11685992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 4863808 - 4863769
Alignment:
Q  191 aatgagaaacgcaagcattccattatcttacatggtatca 230  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  4863808 aatgagaaaggcaagcattccattatcttacatagtatca 4863769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 31337940 - 31337979
Alignment:
Q  191 aatgagaaacgcaagcattccattatcttacatggtatca 230  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  31337940 aatgagaaaggcaatcattccattatcttacatggtatca 31337979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 152
Target Start/End: Original strand, 31343702 - 31343735
Alignment:
Q  119 gtaattatgttgtatcataattagatagttgacc 152  Q
    |||||||||||||| |||||||||||||||||||    
T  31343702 gtaattatgttgtaacataattagatagttgacc 31343735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 18152328 - 18152282
Alignment:
Q  104 tataattattttcttgtaattatgttgtatcataattagatagttga 150  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||    
T  18152328 tataattattttcttgtaattatgctctatcataattagatagttga 18152282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 317
Target Start/End: Complemental strand, 1546648 - 1546590
Alignment:
Q  259 tgctggaatgacatcctgcaaaccttcggccactcctgttgacaccaagcagaaactca 317  Q
    |||||| |||||||| ||||||||||| ||||| ||||| || |||||| |||||||||    
T  1546648 tgctggcatgacatcttgcaaaccttctgccacacctgtcgataccaagaagaaactca 1546590  T

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