View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11579_low_17 (Length: 352)

Name: NF11579_low_17
Description: NF11579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11579_low_17
NF11579_low_17
[»] chr3 (1 HSPs)
chr3 (1-337)||(37462102-37462420)
[»] chr2 (37 HSPs)
chr2 (1-327)||(9315651-9315961)
chr2 (1-327)||(9320603-9320924)
chr2 (40-327)||(9328261-9328541)
chr2 (7-327)||(9061359-9061675)
chr2 (3-327)||(9284390-9284703)
chr2 (190-335)||(9291730-9291872)
chr2 (190-334)||(8573719-8573860)
chr2 (1-125)||(12012924-12013047)
chr2 (196-327)||(9065814-9065942)
chr2 (145-327)||(12012752-12012928)
chr2 (193-323)||(10335667-10335794)
chr2 (145-327)||(11987687-11987866)
chr2 (1-125)||(11987862-11987985)
chr2 (1-87)||(9291570-9291655)
chr2 (12-249)||(9294915-9295144)
chr2 (3-105)||(9364251-9364352)
chr2 (190-333)||(10347569-10347712)
chr2 (145-327)||(12006318-12006497)
chr2 (5-97)||(8573931-8574024)
chr2 (1-104)||(12019285-12019384)
chr2 (190-327)||(10371642-10371779)
chr2 (161-320)||(9274279-9274435)
chr2 (153-271)||(7115925-7116040)
chr2 (258-327)||(7115845-7115914)
chr2 (7-84)||(9274200-9274276)
chr2 (1-49)||(12006543-12006591)
chr2 (223-325)||(12019090-12019189)
chr2 (196-255)||(9364442-9364501)
chr2 (190-326)||(10341157-10341293)
chr2 (3-57)||(10352744-10352798)
chr2 (269-323)||(16268952-16269006)
chr2 (5-97)||(9066038-9066127)
chr2 (190-321)||(10352917-10353045)
chr2 (11-135)||(10371480-10371604)
chr2 (18-138)||(9272296-9272415)
chr2 (12-56)||(10335449-10335493)
chr2 (8-52)||(10341038-10341082)
[»] scaffold0667 (1 HSPs)
scaffold0667 (1-327)||(4077-4392)
[»] chr1 (7 HSPs)
chr1 (1-135)||(29453663-29453795)
chr1 (1-104)||(29422945-29423046)
chr1 (1-104)||(29443711-29443821)
chr1 (223-323)||(29467984-29468081)
chr1 (14-89)||(29468200-29468273)
chr1 (230-327)||(29453504-29453598)
chr1 (223-327)||(29423106-29423207)
[»] chr8 (2 HSPs)
chr8 (196-324)||(41966911-41967036)
chr8 (6-108)||(41967126-41967227)
[»] chr4 (1 HSPs)
chr4 (3-57)||(26574530-26574584)
[»] chr7 (1 HSPs)
chr7 (224-327)||(45230250-45230350)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 37462102 - 37462420
Alignment:
Q  1 agagacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtccaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37462102 agagacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtccaa 37462201  T
Q  101 tgaactaacagaaacttatacataacaaaaactcaaaagaaactcatagtcaataagaaataccttatcttgctcttgcttgacctgtcctccttcttcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||                  |||||||| ||||||||||||||| |||||||||||||||||    
T  37462202 tgaactaacagaaacttatacataacaaaaactcaaaaga------------------aataccttctcttgctcttgcttgtcctgtcctccttcttcc 37462283  T
Q  201 tacaattatcaacaggaaaaggaggtgatacaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaatataactaacttgttc 300  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37462284 tacaattatcaacagggaaaggaggtgatacaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaatataactaacttgttc 37462383  T
Q  301 actcttccaatcataccaaaacagctttctatgatct 337  Q
    |||||||||||||||||||||||||||||| ||||||    
T  37462384 actcttccaatcataccaaaacagctttctgtgatct 37462420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 9315651 - 9315961
Alignment:
Q  1 agagacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtccaa 100  Q
    ||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||  |||||||| ||||||||||||||||||||     
T  9315651 agagaatttaaagtaattagggaatccttgtcctataataagaattcaatttgaccttt-agcatagagtttaactacttatatcatatgatgggtccat 9315749  T
Q  101 tgaactaacagaaacttatacataacaaaaactcaaaagaaactcatagtcaataagaaataccttatcttgctcttgcttgacctgtcctccttcttcc 200  Q
    |||||| |||  |||||||||||| |||||||||||         ||| |  |||||   |||||| ||||| |||||||||     | |||||||||||    
T  9315750 tgaactgacattaacttatacatagcaaaaactcaa---------ataatatataag---taccttctcttgttcttgcttgtatgattctccttcttcc 9315837  T
Q  201 tacaattatcaacaggaaaaggaggtgatacaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaatataactaacttgttc 300  Q
    |||||| ||||||||| || | ||||| ||||||||||||||||||||||||   |||| ||| |||||||| || |||||||| |||| ||||||||||    
T  9315838 tacaataatcaacagggaaggaaggtggtacaagactttcaacacaaatcat---agcttcatccaaattagaaattccttcaacataaataacttgttc 9315934  T
Q  301 actcttccaatcataccaaaacagctt 327  Q
    |||| || | ||| |||||||||||||    
T  9315935 actcatcaagtcacaccaaaacagctt 9315961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 9320603 - 9320924
Alignment:
Q  1 agagacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtccaa 100  Q
    |||||||||||||||||||||| |||||||||| |||| || |||||||||||||| | |||||||||  ||||||  |||||||||||||||||||||     
T  9320603 agagacttcaaagtaattagagtatccttgtccgataataaaaattcaatttgacc-tatagcatagagtttaacttaatatatcatatgatgggtccat 9320701  T
Q  101 tgaactaacagaaacttatacataacaaaaactcaaaagaaactcatagtcaataagaaataccttatcttgctcttgcttgacctgtcctccttcttcc 200  Q
    |||| | |||  |||| ||||||| ||||||||||||| |     ||| |||| || || |||||| || ||||||||||||  |  | ||||||||||     
T  9320702 tgaattgacatcaactaatacatagcaaaaactcaaaaaactagtataatcaa-aacaagtaccttctcatgctcttgcttgtacgattctccttcttct 9320800  T
Q  201 tacaattatcaacaggaaaaggaggtgatacaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaatataactaacttgttc 300  Q
    || ||||||||||||| || | |||||  ||||||||| ||||||||| |||   | ||||||  |||| ||||| |||||||| ||||||||||||| |    
T  9320801 tagaattatcaacagggaaggaaggtgggacaagacttccaacacaaaacat---aactccatggaaatcaggaattccttcaacataactaacttgtgc 9320897  T
Q  301 actcttccaatcataccaaaacagctt 327  Q
    ||||||| |||||||||||||||||||    
T  9320898 actcttcaaatcataccaaaacagctt 9320924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 40 - 327
Target Start/End: Original strand, 9328261 - 9328541
Alignment:
Q  40 aagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtccaatgaactaacagaaacttatacataacaaaaactcaaaag 139  Q
    |||||||||||||||||||| ||||||||  |||||| |||||||||||||| ||||||| |||| | |||  |||||||||||| ||||||||||||      
T  9328261 aagaattcaatttgaccttt-agcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactcaaa-- 9328357  T
Q  140 aaactcatagtcaataagaaataccttatcttgctcttgcttgacctgtcctccttcttcctacaattatcaacaggaaaaggaggtgatacaagacttt 239  Q
    ||||||||| |||| ||||| |||||| |||||||||||||||  |  | ||||||||||||| ||||||||||||| || | ||||| ||||||||||     
T  9328358 aaactcataatcaa-aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttc 9328456  T
Q  240 caacacaaatcatagcagctccattcaaattaggaactccttcaatataactaacttgttcactcttccaatcataccaaaacagctt 327  Q
    ||||| ||| |||| ||    |||  |||| ||||| |||||||| ||||||||||||| ||||| |  |||||||| ||||||||||    
T  9328457 caacagaaaacataaca---tcatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagctt 9328541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 7 - 327
Target Start/End: Complemental strand, 9061675 - 9061359
Alignment:
Q  7 ttcaaagtaattagagaatc-----cttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtccaat 101  Q
    ||||||||||||||||||||     |||||||||||||||||||||||||| ||| |||||||||||  |||||||||||||| |||||||||  ||| |    
T  9061675 ttcaaagtaattagagaatcaaatccttgtcctataacaagaattcaatttaacc-tttagcatagagtttaactacatatattatatgatgg--ccatt 9061579  T
Q  102 gaactaacagaaacttatacataacaaaaactc-aaaagaaactc--atagtcaataagaaataccttatcttgctcttgcttgacctgtcctccttctt 198  Q
    ||||| |||  |||||||||||| ||||||||| |||| ||||||  ||| ||||||||   |||||| ||||| |||||||||  |  | ||||||||     
T  9061578 gaactgacatcaacttatacatagcaaaaactcaaaaaaaaactcatataatcaataag---taccttctcttggtcttgcttgtacgattctccttct- 9061483  T
Q  199 cctacaattatcaacaggaaaaggaggtgatacaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaatataactaacttgt 298  Q
      ||||| |||||||||| ||   ||||||||| |||||| ||||| ||| |||   |||| |||  |||||||||| |||||||| |||||||||||||    
T  9061482 --tacaagtatcaacagggaagaaaggtgatacgagacttccaacataaaacat---agcttcatcaaaattaggaattccttcaacataactaacttgt 9061388  T
Q  299 tcactcttccaatcataccaaaacagctt 327  Q
    ||||||||   ||||||||||||||||||    
T  9061387 tcactcttgagatcataccaaaacagctt 9061359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 3 - 327
Target Start/End: Complemental strand, 9284703 - 9284390
Alignment:
Q  3 agacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtccaatg 102  Q
    |||| ||||||||||| |||| ||||||||| |||| |||||||||||||||||||| |  ||| |  ||||||||||| || |||||||||||||| |     
T  9284703 agacatcaaagtaattggagactccttgtccgataataagaattcaatttgacctttaat-ataaagtttaactacataaattatatgatgggtccatta 9284605  T
Q  103 aactaacagaaacttatacataacaaaaa-ctcaaaagaaactcatagtcaataa-gaaataccttatcttgctcttgcttgacctgtcctccttcttcc 200  Q
    |||||| |  |||||||||| | |||||| |||| |         || ||||||| ||| |||||| |||||||||||||| | |  | ||||||||| |    
T  9284604 aactaaaattaacttatacaaagcaaaaaactcaga---------taatcaataaagaagtaccttctcttgctcttgcttaaacgattctccttcttac 9284514  T
Q  201 tacaattatcaacaggaaaaggaggtgatacaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaatataactaacttgttc 300  Q
    || ||||||||||||| || | |||||  ||||||||||||||||||||||||||   | ||| ||||||||||| |||||||| |||| ||||||| ||    
T  9284513 tagaattatcaacagggaaggaaggtggcacaagactttcaacacaaatcatagc---ttcatccaaattaggaattccttcaacataaataacttgctc 9284417  T
Q  301 actcttccaatcataccaaaacagctt 327  Q
    ||||||| |||||||||||| ||||||    
T  9284416 actcttcaaatcataccaaaccagctt 9284390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 190 - 335
Target Start/End: Original strand, 9291730 - 9291872
Alignment:
Q  190 ctccttcttcctacaattatcaacaggaaaaggaggtgatacaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaatataa 289  Q
    ||||||||||||||||||||||||||| || | ||||| || ||||||||||||||||||||||||   | ||| ||||||||||| |||||||| ||||    
T  9291730 ctccttcttcctacaattatcaacagggaaggaaggtggtagaagactttcaacacaaatcatagc---ttcatccaaattaggaattccttcaacataa 9291826  T
Q  290 ctaacttgttcactcttccaatcataccaaaacagctttctatgat 335  Q
    |||| ||||||||||||| ||||||||||||||||||| |||||||    
T  9291827 ctaatttgttcactcttcaaatcataccaaaacagcttcctatgat 9291872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 190 - 334
Target Start/End: Complemental strand, 8573860 - 8573719
Alignment:
Q  190 ctccttcttcctacaattatcaacaggaaaaggaggtgatacaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaatataa 289  Q
    ||||| ||||||||||||||||||||| ||   ||||| |||||||||| ||||||||| |||||| ||   |||| ||||||||| |||||||| ||||    
T  8573860 ctcctccttcctacaattatcaacagggaagaaaggtggtacaagacttccaacacaaaacatagctgc---attccaattaggaattccttcaacataa 8573764  T
Q  290 ctaacttgttcactcttccaatcataccaaaacagctttctatga 334  Q
    || ||||||||||||||| ||||||||||||||||||| ||||||    
T  8573763 ctgacttgttcactcttcaaatcataccaaaacagcttcctatga 8573719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 12013047 - 12012924
Alignment:
Q  1 agagacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtccaa 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||| ||   ||||||||||||||||||||||||||||     
T  12013047 agagacttcaaagtaattagagaatccttgtcctataataagaattcaatttgacctttaa-catggagtctaactacatatatcatatgatgggtccat 12012949  T
Q  101 tgaactaacagaaacttatacataa 125  Q
    |||| | | |  |||||||||||||    
T  12012948 tgaattgatattaacttatacataa 12012924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 196 - 327
Target Start/End: Complemental strand, 9065942 - 9065814
Alignment:
Q  196 cttcctacaattatcaacaggaaaaggaggtgatacaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaatataactaact 295  Q
    ||||||||||||||||||||| || | || || |||||||||||||||||||||||   |||   ||||| |||||||||||||||||| |||| |||||    
T  9065942 cttcctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatca---cagtgtcattccaattaggaactccttcaacataaataact 9065846  T
Q  296 tgttcactcttccaatcataccaaaacagctt 327  Q
    |||||||||||| ||||||||||||| |||||    
T  9065845 tgttcactcttcaaatcataccaaaagagctt 9065814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 145 - 327
Target Start/End: Complemental strand, 12012928 - 12012752
Alignment:
Q  145 catagtcaataagaaataccttatcttgctcttgcttgacctgtcctccttcttcctacaattatcaacaggaaaaggaggtgatacaagactttcaaca 244  Q
    |||| |||||||||| |||||| ||||||||||||||||    | | ||||||||||| ||||||||||||| || |  |||| |||||||||| |||||    
T  12012928 cataatcaataagaagtaccttctcttgctcttgcttgaatgattccccttcttcctagaattatcaacagggaaggagggtggtacaagacttccaaca 12012829  T
Q  245 caaatcatagcagctccattcaaattaggaactccttcaatataactaacttgttcactcttccaatcataccaaaacagctt 327  Q
    |||||||||||   | |||  |||||||||| |||||||| ||||||||||||   ||||||| |||||||||||| ||||||    
T  12012828 caaatcatagc---ttcatcgaaattaggaattccttcaacataactaacttg---actcttcaaatcataccaaaccagctt 12012752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 193 - 323
Target Start/End: Original strand, 10335667 - 10335794
Alignment:
Q  193 cttcttcctacaattatcaacaggaaaaggaggtgatacaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaatataacta 292  Q
    ||||||||||| |||||||||||| || | |||||| ||||||||| |||||||||||||||   |   || ||||||||||| |||||||| |||||||    
T  10335667 cttcttcctacgattatcaacaggtaaggaaggtgaaacaagacttccaacacaaatcatagtgtc---atccaaattaggaattccttcaacataacta 10335763  T
Q  293 acttgttcactcttccaatcataccaaaaca 323  Q
    | ||||||||||||| |||||||||||||||    
T  10335764 atttgttcactcttcaaatcataccaaaaca 10335794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 145 - 327
Target Start/End: Complemental strand, 11987866 - 11987687
Alignment:
Q  145 catagtcaataagaaataccttatcttgctcttgcttgacctgtcctccttcttcctacaattatcaacaggaaaaggaggtgatacaagactttcaaca 244  Q
    |||| |||||||||| |||||| ||||| ||||||||||    | | ||||||||||| ||||||||||||| || |  |||| |||||||||| |||||    
T  11987866 cataatcaataagaagtaccttctcttggtcttgcttgaatgattccccttcttcctagaattatcaacagggaaggagggtggtacaagacttccaaca 11987767  T
Q  245 caaatcatagcagctccattcaaattaggaactccttcaatataactaacttgttcactcttccaatcataccaaaacagctt 327  Q
    |||||||||||   | |||  || ||||||| ||| |||| |||||||| ||||||||||||| |||||||||||| ||||||    
T  11987766 caaatcatagc---ttcatcgaatttaggaattccgtcaacataactaaattgttcactcttcaaatcataccaaaccagctt 11987687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 11987985 - 11987862
Alignment:
Q  1 agagacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtccaa 100  Q
    ||||||||||||||||||||| |||||||||||||||| | ||||||||||||||| |||| |||| |  |||||||||||||||| ||||||||||||     
T  11987985 agagacttcaaagtaattagaaaatccttgtcctataataggaattcaatttgacc-tttaacataaagtttaactacatatatcacatgatgggtccat 11987887  T
Q  101 tgaactaacagaaacttatacataa 125  Q
    |||| | | |  |||||||||||||    
T  11987886 tgaattgatattaacttatacataa 11987862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 9291570 - 9291655
Alignment:
Q  1 agagacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcat 87  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||  |||||||||| ||||||    
T  9291570 agagacttcaaagtaattagagaatccttgtcctataataagaattcaatttaacc-tttagcatagagtttaactacatgtatcat 9291655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 9295144 - 9294915
Alignment:
Q  12 agtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtccaatgaactaacag 111  Q
    ||||||||||||| || |||||||||| ||||||||||||||||| |||||||||||  ||||| ||||| || |||||||||||||| | |||||| |     
T  9295144 agtaattagagaacccctgtcctataataagaattcaatttgacc-tttagcatagagtttaaccacataaattatatgatgggtccattaaactaaaat 9295046  T
Q  112 aaacttatacataac-aaaaactcaaaagaaactcatagtcaat-aagaaataccttatcttgctcttgcttgacctgtcctccttcttcctacaattat 209  Q
     |||||||||| | | |||||||||          ||| ||||| ||||| |||||| |||||||||||||| | |  | ||||||||| ||| ||||||    
T  9295045 taacttatacaaagcaaaaaactca---------gataatcaataaagaagtaccttctcttgctcttgcttaaacgattctccttcttactagaattat 9294955  T
Q  210 caacaggaaaaggaggtgatacaagactttcaacacaaat 249  Q
    ||||||| || | ||||| ||| |||||||||||| ||||    
T  9294954 caacagggaaggaaggtgctacgagactttcaacataaat 9294915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 9364251 - 9364352
Alignment:
Q  3 agacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtccaatg 102  Q
    ||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||  |||||  |||| ||||||||||||||||||||| || ||    
T  9364251 agacttcaaagtaattagagactccttgtcctataataagaattccatttgacc-tttaatatagagtttaagtacatatatcatatgatgggttcattg 9364349  T
Q  103 aac 105  Q
    |||    
T  9364350 aac 9364352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 333
Target Start/End: Original strand, 10347569 - 10347712
Alignment:
Q  190 ctccttcttcctacaattatcaacaggaaaaggaggtgatacaagactttcaacacaaatcatagcagctccattcaaattagga---actccttcaata 286  Q
    |||||||||||||| |||||||||||| || | |||||  ||||||||| ||||||||| |||||    | |||||| |||||||   | |||||||| |    
T  10347569 ctccttcttcctacgattatcaacagggaaggaaggtgggacaagacttccaacacaaaacatagt---ttcattcatattaggaggaattccttcaaca 10347665  T
Q  287 taactaacttgttcactcttccaatcataccaaaacagctttctatg 333  Q
    ||||||| ||||||||||||| ||||||||||||||||||| |||||    
T  10347666 taactaatttgttcactcttcaaatcataccaaaacagcttcctatg 10347712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 327
Target Start/End: Complemental strand, 12006497 - 12006318
Alignment:
Q  145 catagtcaataagaaataccttatcttgctcttgcttgacctgtcctccttcttcctacaattatcaacaggaaaaggaggtgatacaagactttcaaca 244  Q
    |||| |||||||||| |||||| |||||||||||||||  |  | |||||||||| ||||||| |||||||| || | |||   |||||||||| |||||    
T  12006497 cataatcaataagaagtaccttctcttgctcttgcttgtacgattctccttcttcgtacaattctcaacagggaaggaaggcagtacaagacttccaaca 12006398  T
Q  245 caaatcatagcagctccattcaaattaggaactccttcaatataactaacttgttcactcttccaatcataccaaaacagctt 327  Q
    ||||||||    ||| |||  ||||| |||| ||| ||||| ||| |||||| |||||||||| |||||||||||| ||||||    
T  12006397 caaatcat---cgcttcatcgaaatttggaattccctcaatgtaattaacttcttcactcttcaaatcataccaaaccagctt 12006318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 8574024 - 8573931
Alignment:
Q  5 acttcaaagtaattagagaatccttgtccta--taacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtc 97  Q
    |||||||||||||||||||||||||||||||  | | ||||||| ||||||||| |||||||||||  ||||| |||||||||||||||||||||    
T  8574024 acttcaaagtaattagagaatccttgtcctatgtgataagaatttaatttgacc-tttagcatagagtttaaccacatatatcatatgatgggtc 8573931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 12019384 - 12019285
Alignment:
Q  1 agagacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtccaa 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| | |  |    ||| ||||||  |||||||||||||||||||||||||||||     
T  12019384 agagacttcaaagtaattagagaatccttgtcctataataagaattccaataca----ttaacatagagtttaactacatatatcatatgatgggtccat 12019289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 190 - 327
Target Start/End: Original strand, 10371642 - 10371779
Alignment:
Q  190 ctccttcttcctacaattatcaacaggaaaaggaggtgat---acaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaata 286  Q
    |||||||||||||| |||||||||| |  |||| |||| |   ||||||||  ||||||||| ||||||| |   || |||||||| |  |||||||| |    
T  10371642 ctccttcttcctaccattatcaacaaggtaagggggtggtggtacaagactaccaacacaaaccatagcatc---atccaaattagaatttccttcaaca 10371738  T
Q  287 taactaacttgttcactcttccaatcataccaaaacagctt 327  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  10371739 taactaacttgttcactcttcaaatcataccaaaacagctt 10371779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 320
Target Start/End: Original strand, 9274279 - 9274435
Alignment:
Q  161 taccttatcttgctcttgcttgacctgtcctccttcttcctacaattatcaacaggaaaaggaggtgatacaagactttcaacacaaatcatagcagctc 260  Q
    |||||| |||||||||||||||     | ||||||||||||| ||||||||||||| || |  |||| ||||| |||| |||| ||||| ||||    ||    
T  9274279 taccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacagggaaggagggtggtacaaaacttccaacccaaataatagt---tc 9274375  T
Q  261 cattcaaattaggaactccttcaatataactaacttgttcactcttccaatcataccaaa 320  Q
    |||| || ||||||| ||||| || | |||||||||||||||||||| ||||||||||||    
T  9274376 cattgaagttaggaattcctttaacaaaactaacttgttcactcttcaaatcataccaaa 9274435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 271
Target Start/End: Complemental strand, 7116040 - 7115925
Alignment:
Q  153 ataagaaataccttatcttgctcttgcttgacctgtcctccttcttcctacaattatcaacaggaaaaggaggtgatacaagactttcaacacaaatcat 252  Q
    ||||||| |||||| |||||||||||||||     | ||||||||||||||||||||||||||| || | ||||| |||||| ||||||| ||||||||     
T  7116040 ataagaagtaccttctcttgctcttgcttgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtacaaggctttcaaaacaaatca- 7115942  T
Q  253 agcagctccattcaaatta 271  Q
       ||||||||||||||||    
T  7115941 --aagctccattcaaatta 7115925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 258 - 327
Target Start/End: Complemental strand, 7115914 - 7115845
Alignment:
Q  258 ctccattcaaattaggaactccttcaatataactaacttgttcactcttccaatcataccaaaacagctt 327  Q
    ||||||| |||||||||| |||||||| | ||||||||||||| |||||| |||||||||||| ||||||    
T  7115914 ctccatttaaattaggaattccttcaacacaactaacttgttcgctcttcaaatcataccaaaccagctt 7115845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 9274200 - 9274276
Alignment:
Q  7 ttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatat 84  Q
    |||||||||||||| ||||||||||||||||| ||||||||||  ||||| ||||||||| |  ||||||||||||||    
T  9274200 ttcaaagtaattagtgaatccttgtcctataataagaattcaacatgacc-tttagcataaagtttaactacatatat 9274276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12006591 - 12006543
Alignment:
Q  1 agagacttcaaagtaattagagaatccttgtcctataacaagaattcaa 49  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||    
T  12006591 agagacttcaaagtaattagagaatccttgtcctaaaataagaattcaa 12006543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 325
Target Start/End: Complemental strand, 12019189 - 12019090
Alignment:
Q  223 aggtgatacaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaatataactaacttgttcactcttccaatcataccaaaac 322  Q
    ||||| |||||||||| ||||||||||||| ||   | |||  |||||||||| |||||||| |||||||||||| | ||||||| |||||||||||| |    
T  12019189 aggtggtacaagacttccaacacaaatcatggc---ttcatcgaaattaggaattccttcaacataactaacttgctgactcttcaaatcataccaaacc 12019093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 9364442 - 9364501
Alignment:
Q  196 cttcctacaattatcaacaggaaaaggaggtgatacaagactttcaacacaaatcatagc 255  Q
    ||||||||||||||||||||| |||| ||||| |||||||||  ||||||||||||||||    
T  9364442 cttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagc 9364501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 326
Target Start/End: Original strand, 10341157 - 10341293
Alignment:
Q  190 ctccttcttcctacaattatcaacaggaaaaggaggtgatacaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaa---ta 286  Q
    |||||||||||||| ||| |||||||| ||   ||||| ||| | |||| ||||||| |||||||||    ||| ||||| ||||| ||||||||    |    
T  10341157 ctccttcttcctacgattgtcaacagggaagaaaggtggtactatacttccaacacacatcatagca---tcatccaaatcaggaattccttcaacataa 10341253  T
Q  287 taactaacttgttcactcttccaatcataccaaaacagct 326  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  10341254 taactaacttgttcactctccaaatcataccaaaacagct 10341293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 10352744 - 10352798
Alignment:
Q  3 agacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgacct 57  Q
    |||| |||||||||||||||||||||| |||||| | ||||||||||||||||||    
T  10352744 agacgtcaaagtaattagagaatccttatcctatgataagaattcaatttgacct 10352798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 323
Target Start/End: Original strand, 16268952 - 16269006
Alignment:
Q  269 ttaggaactccttcaatataactaacttgttcactcttccaatcataccaaaaca 323  Q
    ||||||| |||||||| |||||||||| ||||||||||| |||||||||||||||    
T  16268952 ttaggaattccttcaacataactaactcgttcactcttcaaatcataccaaaaca 16269006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 9066127 - 9066038
Alignment:
Q  5 acttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtc 97  Q
    |||||||||||||||||||||| || |||||| | |||| |||||||||||| || |||| ||   ||| |||||||||||||||||||||||    
T  9066127 acttcaaagtaattagagaatctttatcctatgataagacttcaatttgacc-ttgagcaaag--tttagctacatatatcatatgatgggtc 9066038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 321
Target Start/End: Original strand, 10352917 - 10353045
Alignment:
Q  190 ctccttcttcctacaattatcaacaggaaaaggaggtgatacaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaatataa 289  Q
    ||||| |||||||| |||||||||||| ||   ||||| |||||||||| |||||||||||||   ||   ||| ||||||| ||| | ||| || ||||    
T  10352917 ctcctgcttcctacgattatcaacagggaagtaaggtggtacaagacttccaacacaaatcat---agtgtcatccaaattaagaatttcttgaacataa 10353013  T
Q  290 ctaacttgttcactcttccaatcataccaaaa 321  Q
    |||||||||| ||||| | |||||||||||||    
T  10353014 ctaacttgtttactctccaaatcataccaaaa 10353045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 10371480 - 10371604
Alignment:
Q  11 aagtaattagagaatccttgtcc-tataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtccaatgaactaac 109  Q
    ||||||||||| |||||||  || ||| | |||||||||||||||||||| | || |||  |||||| ||||||| ||||||||| |||| |||||| |     
T  10371480 aagtaattagaaaatcctttaccctatgataagaattcaatttgacctttaa-cacagagtttaactgcatatataatatgatggatccattgaactgat 10371578  T
Q  110 agaaacttatacataacaaaaactca 135  Q
    |  |||||||||| ||||||||||||    
T  10371579 attaacttatacacaacaaaaactca 10371604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 9272296 - 9272415
Alignment:
Q  18 tagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtccaatgaactaacagaaactt 117  Q
    |||||||||||  | |||||| |||||||||||| ||||||| ||||| |   |||| | || | |||||||||||||| || | |||| |||  |||||    
T  9272296 tagagaatcctatttctataataagaattcaattagaccttt-agcattgggtttaattgcaaagatcatatgatgggttcattaaactgacattaactt 9272394  T
Q  118 atacataacaaaaactcaaaa 138  Q
    ||||||| |||||||| ||||    
T  9272395 atacatagcaaaaactaaaaa 9272415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 10335449 - 10335493
Alignment:
Q  12 agtaattagagaatccttgtcctataacaagaattcaatttgacc 56  Q
    |||||||||||||||||  |||||| | |||||||||||||||||    
T  10335449 agtaattagagaatcctcatcctatgataagaattcaatttgacc 10335493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 10341038 - 10341082
Alignment:
Q  8 tcaaagtaattagagaatccttgtcctataacaagaattcaattt 52  Q
    |||| ||||||||||||||||| |||||| | |||||||||||||    
T  10341038 tcaaggtaattagagaatccttatcctatgataagaattcaattt 10341082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 4077 - 4392
Alignment:
Q  1 agagacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtccaa 100  Q
    ||||| ||||||||||||| ||||||||| |||||||| |||||||||||||||  |||||||| |||  ||||||| ||| |||||||||||||||||     
T  4077 agagaattcaaagtaattatagaatccttttcctataataagaattcaatttgag-ttttagcacagagtttaactaaataaatcatatgatgggtccat 4175  T
Q  101 tgaactaacagaaacttatacataacaaaaactcaaaagaaactc-atagtcaataagaaataccttatcttgctcttgcttgacctgtcctccttcttc 199  Q
    |||||  | |  |||||||||| | |||||||| ||||  ||||| ||| ||||||||   |||||| |||||||||||| ||     | |||||||||     
T  4176 tgaacagatattaacttatacacagcaaaaactgaaaa--aactcgataatcaataag---taccttttcttgctcttgcatgtatgattctccttctta 4270  T
Q  200 ctacaattatcaacaggaaaaggaggtgatacaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaatataactaacttgtt 299  Q
    ||| |||||||||||||||| | ||||| |||||||||| ||||||||||| |   ||||||||| |||| ||||| | ||||   ||||||||||||||    
T  4271 ctagaattatcaacaggaaaggaaggtggtacaagacttccaacacaaatctt---agctccattgaaatcaggaatttcttc---ataactaacttgtt 4364  T
Q  300 cactcttccaatcataccaaaacagctt 327  Q
    || ||||| |||||||||||||||||||    
T  4365 cagtcttcaaatcataccaaaacagctt 4392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 29453795 - 29453663
Alignment:
Q  1 agagacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtccaa 100  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||   |||||| |||| |  |||||| ||||||||||||||||| || |     
T  29453795 agagacttcaaagtaattagagaatccttgttctataataagaattcaattt--acttttaacataaagtttaactgcatatatcatatgatggatctat 29453698  T
Q  101 tgaactaacagaaacttatacataacaaaaactca 135  Q
    |||||| | |  |||||||||| | ||||||||||    
T  29453697 tgaactgaaattaacttatacagagcaaaaactca 29453663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 29422945 - 29423046
Alignment:
Q  1 agagacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtccaa 100  Q
    |||||||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||  | |||  ||||||| |||||||||||||| ||||||     
T  29422945 agagacttcaaaataattagagaatcattgtcatataataagaattcaatttgacctttta--acagagtttaactagatatatcatatgatcggtccat 29423042  T
Q  101 tgaa 104  Q
    ||||    
T  29423043 tgaa 29423046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 29443821 - 29443711
Alignment:
Q  1 agagacttcaaagtaattagagaatccttgtcctataacaagaattca-------atttgaccttttagcatagaacttaactacatatatcatatgatg 93  Q
    |||||||||||| ||||||||||||||||||||||| | |||||||||       ||||||||||||| ||| ||  ||||||| |||||||||||||||    
T  29443821 agagacttcaaaataattagagaatccttgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaactagatatatcatatgatg 29443722  T
Q  94 ggtccaatgaa 104  Q
    |||||| ||||    
T  29443721 ggtccattgaa 29443711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 323
Target Start/End: Complemental strand, 29468081 - 29467984
Alignment:
Q  223 aggtgatacaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaatataactaacttgttcactcttccaatcataccaaaac 322  Q
    ||||| |||||||||| ||||||||||||||||   | ||||||||||||||| |||||||| |||| |||| |||||||||||   |||||||||||||    
T  29468081 aggtggtacaagacttccaacacaaatcatagc---ttcattcaaattaggaattccttcaacataattaacatgttcactcttgagatcataccaaaac 29467985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 29468273 - 29468200
Alignment:
Q  14 taattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatat 89  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||  | |||  |||||| ||||||||||||    
T  29468273 taattagagaatcattgtcctataataagaattcaatttgacctttta--acagagtttaactgcatatatcatat 29468200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 29453598 - 29453504
Alignment:
Q  230 acaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaatataactaacttgttcactcttccaatcataccaaaacagctt 327  Q
    ||||||||| ||||||||||||||||   |  ||  |||||||||| |||||||| | |||||||||||||||||||   ||||||||||||||||||    
T  29453598 acaagacttccaacacaaatcatagc---ttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgagatcataccaaaacagctt 29453504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 327
Target Start/End: Original strand, 29423106 - 29423207
Alignment:
Q  223 aggtgatacaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaatataactaacttgttcactcttccaatcataccaaaac 322  Q
    |||||||||||||||| ||||||||||||| ||   |  ||  |||||||||| ||||| || | |||||||||||||||||||   |||||||||||||    
T  29423106 aggtgatacaagacttccaacacaaatcatggc---ttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaaac 29423202  T
Q  323 agctt 327  Q
    |||||    
T  29423203 agctt 29423207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 196 - 324
Target Start/End: Complemental strand, 41967036 - 41966911
Alignment:
Q  196 cttcctacaattatcaacaggaaaaggaggtgatacaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaatataactaact 295  Q
    |||| |||||||| ||||||| || | ||||| |||||||||| ||||||||| ||| ||   | |||  |||||||||| |||||||| |||| ||| |    
T  41967036 cttcttacaattaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggc---ttcatcaaaattaggaattccttcaacataagtaatt 41966940  T
Q  296 tgttcactcttccaatcataccaaaacag 324  Q
    |||||||||||| ||||||||||||||||    
T  41966939 tgttcactcttcaaatcataccaaaacag 41966911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 41967227 - 41967126
Alignment:
Q  6 cttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtccaatgaac 105  Q
    |||| |||||||||||||||  || |||||||| ||||||||||||| ||| |||| ||||||  |||| ||||| |||  ||||||||||||| || ||    
T  41967227 cttcgaagtaattagagaatagttatcctataataagaattcaatttaacc-tttaacatagagtttaagtacatgtattgtatgatgggtccattgcac 41967129  T
Q  106 taa 108  Q
    |||    
T  41967128 taa 41967126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 26574530 - 26574584
Alignment:
Q  3 agacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgacct 57  Q
    |||| |||||||||||||||||||||| |||||| | ||||||||||||||||||    
T  26574530 agacgtcaaagtaattagagaatccttatcctatgataagaattcaatttgacct 26574584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 327
Target Start/End: Original strand, 45230250 - 45230350
Alignment:
Q  224 ggtgatacaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaatataactaacttgttcactcttccaatcataccaaaaca 323  Q
    ||||||||||| |||||| ||||||||||  |   | |||| ||| |||||| ||||| || || | ||||||||||||||||  |||||||||||||||    
T  45230250 ggtgatacaaggctttcagcacaaatcattac---ttcattgaaagtaggaattccttgaacatgagtaacttgttcactcttgaaatcataccaaaaca 45230346  T
Q  324 gctt 327  Q
    ||||    
T  45230347 gctt 45230350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University