View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11579_low_18 (Length: 343)
Name: NF11579_low_18
Description: NF11579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11579_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 8337057 - 8337383
Alignment:
| Q |
1 |
cagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaacaacacatcattcttgaccacttgaaagttagttaaggtatatgtaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8337057 |
cagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaacaacacatcattcttgagcacttgaaagttagttaaggtatatgtaga |
8337156 |
T |
|
| Q |
101 |
attaacttcaagtgttttgtcataaacagatttgtatgcagttggaatgagtagttgaatatcatggccctaatattgtaaaataagcttaaagtgaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8337157 |
attaacttcaagtgttttgtcataaacagatttgtatgcagttggaatgagtagttgaatatcatggccctaatatggtaaaataagcttaaagtgaata |
8337256 |
T |
|
| Q |
201 |
agtaacnnnnnnnnntttgttttcataaacaaaagtaaaatcaatgagtgaccaaaaaatagcagtagggtattatgttcaaatgttatctcccatacct |
300 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8337257 |
agtaac-aaaataaatttgttttcataaacaaaagtaaaaccaatgagtgaccaaaaaatagcagtagggtattatgttcaaatgttatgtcccatacct |
8337355 |
T |
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| Q |
301 |
tagcatcaacaatcagcaattccaaatg |
328 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
8337356 |
tagcatcaacaatcagcaattccaaatg |
8337383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 10234173 - 10234378
Alignment:
| Q |
1 |
cagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaacaacacatcattcttgaccacttgaaagttagttaaggtatatgtaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10234173 |
cagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaacaacacatcattcttgaccacatgaaagttagttaaggtatatgtaga |
10234272 |
T |
|
| Q |
101 |
attaacttcaagtgttttgtcataaacagatttgtatgcagttggaatgagtagttgaatatcatggccctaatattgtaaaataagcttaaagtgaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10234273 |
attaacttcaagtgttttgtcataaacagatttgtatgcagttggaatgagtacttgaatatcatggccctaatatggtaaaataagcttaaagtgaata |
10234372 |
T |
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| Q |
201 |
agtaac |
206 |
Q |
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|||||| |
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| T |
10234373 |
agtaac |
10234378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 217 - 328
Target Start/End: Original strand, 10234550 - 10234661
Alignment:
| Q |
217 |
ttgttttcataaacaaaagtaaaatcaatgagtgaccaaaaaatagcagtagggtattatgttcaaatgttatctcccataccttagcatcaacaatcag |
316 |
Q |
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|||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10234550 |
ttgttttcataaacaaaagtaaaaccaatcagtgaccagaaaatagcagtagggtattatgttcaaatgttatctcccataccttagcatcaacaatcag |
10234649 |
T |
|
| Q |
317 |
caattccaaatg |
328 |
Q |
| |
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|||||||||||| |
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|
| T |
10234650 |
caattccaaatg |
10234661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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