View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11579_low_19 (Length: 336)
Name: NF11579_low_19
Description: NF11579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11579_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 2907626 - 2907306
Alignment:
| Q |
1 |
gaatttaatttgctattaatcatcatgaatatgtatctttaccttatttgcaattgtgatactttgacattgatcaacaataatatcacatgtcaaagta |
100 |
Q |
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| T |
2907626 |
gaatttaatttgctattaatcatcatgaatatgtatctttaccttatttgcaattgtgatactttgacattgatcaacaataatatcacatgtcaaagta |
2907527 |
T |
|
| Q |
101 |
tattaacacttccttc--gaaaaaacgtaaatgaacaccgtcaaaaatgtcatcaataaacttcatatcagaatgtcaacatcgtttcactaatcctatg |
198 |
Q |
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| T |
2907526 |
tattaacacttccttcgagaaaaaacgtaaatgaacaccatcaaaaatgtcatcaataaacttcatatcagaatgtcaacatcgtttcactaatcctatg |
2907427 |
T |
|
| Q |
199 |
annnnnnnaataatagattcatcgtcaaaaagtttactctcttgaatgtgcgacattgatgaaagataaaatacatcattagaacagagtgaaatgagaa |
298 |
Q |
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| T |
2907426 |
attattttaataatagattcatcgtcaaaaaatttattctcttgaatgtgcgacattgatttaagataaaatacatcattagaacaggatgaaatgagaa |
2907327 |
T |
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| Q |
299 |
ttattagctcaaagggaaaat |
319 |
Q |
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||||||||||||||||||||| |
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| T |
2907326 |
ttattagctcaaagggaaaat |
2907306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 2814095 - 2813993
Alignment:
| Q |
1 |
gaatttaatttgctattaatcatcatgaatatgtatctttaccttatttgcaattgtgatactttgacattgatcaacaataatatcacatgtcaaagta |
100 |
Q |
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| T |
2814095 |
gaattaaatttgttattaatcatcatgaataggcatcatttc----tttgcaattgtgatagtttgacattgatc-acaataatttcacatgtcaaagta |
2814001 |
T |
|
| Q |
101 |
tattaaca |
108 |
Q |
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||||||| |
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| T |
2814000 |
aattaaca |
2813993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 143 - 319
Target Start/End: Complemental strand, 13505794 - 13505616
Alignment:
| Q |
143 |
aaatgtcatcaataaacttcatatcagaatgtcaacatcgtttcactaatcctatgannnnnnn--aataatagattcatcgtcaaaaagtttactctct |
240 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||| |
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| T |
13505794 |
aaatgtcatcaataaacttcatatcagaatgtcagcatcgtttcactaatcctttgatttttttttaataacagattcatcgtcaaaaattttactctct |
13505695 |
T |
|
| Q |
241 |
tgaatgtgcgacattgatgaaagataaaatacatcattagaacagagtgaaatgagaattattagctcaaagggaaaat |
319 |
Q |
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| T |
13505694 |
tgaatgtgcgacattgatgaaagataaaatacatcattaaaaaagggtgaaatgagaattattagctcaaagggaaaat |
13505616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 312
Target Start/End: Original strand, 40798474 - 40798573
Alignment:
| Q |
213 |
agattcatcgtcaaaaagtttactctcttgaatgtgcgacattgatgaaagataaaatacatcattagaacagagtgaaatgagaattattagctcaaag |
312 |
Q |
| |
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||||||||| || |||| ||||| |||||| |||||||||||||||| ||||||| ||| |||| ||| | |||||| ||||||||||||||||||| |
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| T |
40798474 |
agattcatcctcgaaaaatttacgctcttgggtgtgcgacattgatgacggataaaacacaacatttgaaaatggtgaaaagagaattattagctcaaag |
40798573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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