View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11579_low_20 (Length: 328)
Name: NF11579_low_20
Description: NF11579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11579_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 30612186 - 30612495
Alignment:
| Q |
1 |
aaccagaaggaggttgcattagatcaaattcggttaaatcttttccctttgaatatctagatggtgctagagtgtaaccaatcatgattgaactaataat |
100 |
Q |
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| T |
30612186 |
aaccagaaggaggttgcattagatcaaattcggttaaatcttttccctttgaatatctagatggtgctagagtgtaaccaatcatgattgaactaataat |
30612285 |
T |
|
| Q |
101 |
gcaataatgaaaagctttgatgtctaaacgtttggttaaagatggaatccaatgagtgaaatcatagaaaacaatttgaggtttgagatttgtgagatga |
200 |
Q |
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| T |
30612286 |
gcaataatgaaaagctttgatgtctaaacgtttggttaaagatggaatccaatgagtgaaatcatagaaaacaatttgaggtttgagatttgtgagatga |
30612385 |
T |
|
| Q |
201 |
gtttcaatgtcaggttgagtaaggtccatggctgtcatgatgtatggatgtaaaggatatgggacatcagctgttgtttctgcattgagagggagacctt |
300 |
Q |
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| T |
30612386 |
gtttcaatgtcaggttgagtaaggtccatggctgtcatgatgtgtggatgtaaaggataagggacatcagctgttgtttctgcattgagagggagacctt |
30612485 |
T |
|
| Q |
301 |
caacatgagg |
310 |
Q |
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|||||||||| |
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| T |
30612486 |
caacatgagg |
30612495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 30594838 - 30595147
Alignment:
| Q |
1 |
aaccagaaggaggttgcattagatcaaattcggttaaatcttttccctttgaatatctagatggtgctagagtgtaaccaatcatgattgaactaataat |
100 |
Q |
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||||| |||| |||||||| ||||||||||| ||||||| ||||||| ||||||||||| ||||| |||| | ||||||| |||||||||||||||||| |
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| T |
30594838 |
aaccataaggtggttgcatgagatcaaattcagttaaattgtttccctgtgaatatctagctggtgttagactataaccaaccatgattgaactaataat |
30594937 |
T |
|
| Q |
101 |
gcaataatgaaaagctttgatgtctaaacgtttggttaaagatggaatccaatgagtgaaatcatagaaaacaatttgaggtttgagatttgtgagatga |
200 |
Q |
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| T |
30594938 |
gcaataatgaaaagctttgatgcctaaacgcttggttaaagatggaatccaatgagtgaaatcatagaaaacaatttgaggtttgagatttgtgagatga |
30595037 |
T |
|
| Q |
201 |
gtttcaatgtcaggttgagtaaggtccatggctgtcatgatgtatggatgtaaaggatatgggacatcagctgttgtttctgcattgagagggagacctt |
300 |
Q |
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| T |
30595038 |
gtttcaatgtcaggttgagtaaggtccatggctgtcatgatgtgtggatgtaaaggataagggacatcagctgttgtttctgcattgagagggagacctt |
30595137 |
T |
|
| Q |
301 |
caacatgagg |
310 |
Q |
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|||||||||| |
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| T |
30595138 |
caacatgagg |
30595147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 30614202 - 30614515
Alignment:
| Q |
1 |
aaccagaaggaggttgcattagatcaaattcggttaaatcttttccctttgaatatctagatggtgctagagtgtaaccaa----tcatgattgaactaa |
96 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||| |||| | |||||| |
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| T |
30614202 |
aaccagaaggaggttccatgagatcaaattcggttaaatcttttcccattgaatatctagctggtgttagagtgtaaccaaccaatcataaccgaactag |
30614301 |
T |
|
| Q |
97 |
taatgcaataatgaaaagctttgatgtctaaacgtttggttaaagatggaatccaatgagtgaaatcatagaaaacaatttgaggtttgagatttgtgag |
196 |
Q |
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| |||||||||||| ||||||||| |||||||||| | || |||||||| |||||||||||||||||| ||||||| |||||||| ||||||| ||| |
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| T |
30614302 |
cagtgcaataatgaagagctttgatacctaaacgttttgatatagatggaagccaatgagtgaaatcataaaaaacaacgtgaggtttaagatttgagag |
30614401 |
T |
|
| Q |
197 |
atgagtttcaatgtcaggttgagtaaggtccatggctgtcatgatgtatggatgtaaaggatatgggacatcagctgttgtttctgcattgagagggaga |
296 |
Q |
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|||||||||||| ||| ||||||| |||||||| ||||||||||||| |||||||||||| || || |||||||||||||||||||||||| |||| || |
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| T |
30614402 |
atgagtttcaatatcatgttgagttaggtccattgctgtcatgatgtgtggatgtaaagggtaaggaacatcagctgttgtttctgcattgggaggaagg |
30614501 |
T |
|
| Q |
297 |
ccttcaacatgagg |
310 |
Q |
| |
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|||||||||||||| |
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| T |
30614502 |
ccttcaacatgagg |
30614515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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