View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11579_low_21 (Length: 323)

Name: NF11579_low_21
Description: NF11579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11579_low_21
NF11579_low_21
[»] chr3 (6 HSPs)
chr3 (7-312)||(19199131-19199437)
chr3 (75-285)||(6777837-6778048)
chr3 (84-300)||(1596237-1596454)
chr3 (84-300)||(34437781-34437997)
chr3 (24-71)||(34437674-34437721)
chr3 (200-289)||(21565966-21566054)
[»] chr1 (8 HSPs)
chr1 (79-302)||(43782700-43782924)
chr1 (84-300)||(48999827-49000044)
chr1 (79-300)||(45152677-45152899)
chr1 (160-300)||(40553596-40553736)
chr1 (75-312)||(3375894-3376131)
chr1 (160-289)||(33297214-33297343)
chr1 (19-71)||(45152954-45153005)
chr1 (23-73)||(3375795-3375845)
[»] scaffold0018 (1 HSPs)
scaffold0018 (79-312)||(180324-180558)
[»] chr7 (3 HSPs)
chr7 (81-300)||(12627421-12627641)
chr7 (74-312)||(1326840-1327079)
chr7 (160-291)||(38457493-38457624)
[»] chr5 (9 HSPs)
chr5 (81-264)||(26653528-26653712)
chr5 (81-264)||(26925113-26925297)
chr5 (84-290)||(13274093-13274300)
chr5 (160-300)||(2742997-2743137)
chr5 (160-216)||(21101423-21101479)
chr5 (7-71)||(26653769-26653833)
chr5 (7-71)||(26925354-26925418)
chr5 (168-289)||(24209211-24209332)
chr5 (16-71)||(21101616-21101672)
[»] chr8 (3 HSPs)
chr8 (75-300)||(37227721-37227947)
chr8 (145-291)||(14096700-14096846)
chr8 (24-71)||(37227623-37227670)
[»] chr2 (4 HSPs)
chr2 (75-291)||(31116886-31117103)
chr2 (181-312)||(28035635-28035766)
chr2 (24-71)||(28035925-28035972)
chr2 (13-71)||(31116777-31116835)
[»] chr4 (11 HSPs)
chr4 (169-291)||(25147344-25147466)
chr4 (84-300)||(42705139-42705356)
chr4 (160-301)||(39465347-39465486)
chr4 (24-79)||(3681088-3681143)
chr4 (24-71)||(25147612-25147659)
chr4 (24-71)||(32305590-32305637)
chr4 (24-71)||(39465623-39465670)
chr4 (194-300)||(32307880-32307986)
chr4 (207-300)||(3680825-3680918)
chr4 (160-197)||(32305774-32305811)
chr4 (27-71)||(42705035-42705079)
[»] scaffold0251 (2 HSPs)
scaffold0251 (80-291)||(16977-17192)
scaffold0251 (24-71)||(16875-16922)
[»] scaffold0408 (1 HSPs)
scaffold0408 (145-291)||(7042-7188)
[»] chr6 (3 HSPs)
chr6 (160-300)||(6285814-6285954)
chr6 (147-264)||(35014337-35014454)
chr6 (199-289)||(2029728-2029818)
[»] scaffold0007 (1 HSPs)
scaffold0007 (160-231)||(257345-257416)
[»] scaffold0010 (1 HSPs)
scaffold0010 (191-289)||(32353-32451)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 312
Target Start/End: Complemental strand, 19199437 - 19199131
Alignment:
Q  7 gatggacatcaactgtgtagtcaggaatggacgcatggaggttcataataggatgtgatactctacaaaactagatcacccctctcctgctggctgaggg 106  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||     
T  19199437 gatgggcatcaactgtgtagtcaggaatggacgcaggggggttcataataggatgtgatactctacaaaaatagatcacccctctcctactggctgagga 19199338  T
Q  107 catgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactg 205  Q
    ||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| ||| | |||||||| ||||||    
T  19199337 catgtagagcaaactctgcgaaggccataaccacgtcccctgccgtaagaggcccaatgtttgtaggaggcctgggaacagtttggacatactagtactg 19199238  T
Q  206 cctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaaggacgtaatgtcttgt 305  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||| || |||||||||||||||| ||    
T  19199237 cctaagaacccactctggcaagtgacataccctcttgtatttgccggccatgatccatccggagcactagcatatgttctaaaaggacgtaatgtctcgt 19199138  T
Q  306 tgtctct 312  Q
    |||||||    
T  19199137 tgtctct 19199131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 75 - 285
Target Start/End: Complemental strand, 6778048 - 6777837
Alignment:
Q  75 aactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 173  Q
    |||| |||||||||||| ||| ||||||||| ||||||||| |||||| | |||||||   || |||||  |||||| || | || ||||||||||||||    
T  6778048 aactggatcacccctctgctgatggctgaggacatgtagagcaaactccgtgaaggcctgggccacgtcatctgccgcaataagctcaatgtctgtagga 6777949  T
Q  174 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 273  Q
    | |||  ||||||||| ||||||| |||||||||||| ||||| || | |||||||||  ||| || |||  ||| |||||||||||||||  ||| ||     
T  6777948 gccctcagaatagtctggacatacccgtactgcctaagaaccctctctagcaagtgacggaccatcctgtcgttgtcggccatgatccatccggagcacc 6777849  T
Q  274 agcatatgtcct 285  Q
    ||||||||||||    
T  6777848 agcatatgtcct 6777837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 84 - 300
Target Start/End: Original strand, 1596237 - 1596454
Alignment:
Q  84 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 182  Q
    |||||||| ||| ||| ||||| ||||||||| ||||||   |||||||   || |||||  |||||| || | || ||||||||||||||| |||  ||    
T  1596237 acccctctgctgatgggtgaggacatgtagagcaaactccatgaaggcctgggccacgtcatctgccgcaataagctcaatgtctgtaggagccctcaga 1596336  T
Q  183 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 282  Q
    ||||||| |||||||  ||||||||||| ||||| || |||||||||||  ||| || |||   ||| ||||||||||||||  |||||| |||||||||    
T  1596337 atagtctggacatacctgtactgcctaagaacccgctttggcaagtgacggaccatcctgtcgctgctggccatgatccatccggagtaccagcatatgt 1596436  T
Q  283 cctgaaaggacgtaatgt 300  Q
    ||||||||| ||| ||||    
T  1596437 cctgaaagggcgtgatgt 1596454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 84 - 300
Target Start/End: Original strand, 34437781 - 34437997
Alignment:
Q  84 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 182  Q
    |||||| ||||| ||||||||| ||||||||| |||||| | |||| || | || |||||  | |||| || | || ||||||| ||||||| |||||||    
T  34437781 acccctatcctgatggctgaggacatgtagagcaaactccgtgaagacc-tggccacgtcatccgccgcaataagctcaatgtcagtaggagccctggga 34437879  T
Q  183 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 282  Q
    |||||||  |||||| |||||||||||| ||||| || ||| || ||||  ||| || ||    | ||| ||||||||||||  |||||| |||||||||    
T  34437880 atagtctgtacatacccgtactgcctaagaacccgctctggaaattgacggaccatcctgccactaccgaccatgatccatccggagtaccagcatatgt 34437979  T
Q  283 cctgaaaggacgtaatgt 300  Q
    ||||||||| ||| ||||    
T  34437980 cctgaaagggcgtgatgt 34437997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 34437674 - 34437721
Alignment:
Q  24 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 71  Q
    ||||||||||||| |||| ||||||||| |||||||||||||||||||    
T  34437674 tagtcaggaatgggcgcagggaggttcacaataggatgtgatactcta 34437721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 289
Target Start/End: Complemental strand, 21566054 - 21565966
Alignment:
Q  200 gtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaa 289  Q
    ||||||||| | ||||| ||  ||||||||||| ||| |||| | |||| ||||||||||||||| ||||||| |||| | |||||||||    
T  21566054 gtactgcctcagaacccgctcgggcaagtgacacaccatcttttgtttgtcggccatgatccatccagagtac-agcacacgtcctgaaa 21565966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 79 - 302
Target Start/End: Original strand, 43782700 - 43782924
Alignment:
Q  79 agatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcc 177  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||   | |||||||||| ||||||| || || |||||||||||||||||||||||||     
T  43782700 agatcacccctctcctgctggctgaggacatgtagagcaaactccatggaggccatagccacgtcccttgacgcaagaggcccaatgtctgtaggaggca 43782799  T
Q  178 tgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagca 277  Q
    |||| ||||||| |||||||||||| ||||||| ||| | || |||||||||||| |||||| ||| ||||||| |||||||||||| ||||||||||||    
T  43782800 tgggtatagtctggacatactcgtattgcctaagaactcgctctggcaagtgacagaccctcatgtctttgccgaccatgatccatccagagtactagca 43782899  T
Q  278 tatgtcctgaaaggacgtaatgtct 302  Q
    |||||| ||||||| ||||||||||    
T  43782900 tatgtcgtgaaagggcgtaatgtct 43782924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 84 - 300
Target Start/End: Complemental strand, 49000044 - 48999827
Alignment:
Q  84 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 182  Q
    |||||| ||||| ||||||||| ||||||||| |||||| | |||||||  ||| |||||  | |||| || | || ||||||||||||||| |||||||    
T  49000044 acccctatcctgatggctgaggacatgtagagcaaactccgtgaaggcctgagccacgtcatccgccgcaataagctcaatgtctgtaggagccctggga 48999945  T
Q  183 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 282  Q
    ||||||||||||||| |||||||||||| ||||| || |||||||||||  ||| || |||  |||||||||||||||||||  |||||| |||||||||    
T  48999944 atagtctagacatacccgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgttgccggccatgatccatccggagtaccagcatatgt 48999845  T
Q  283 cctgaaaggacgtaatgt 300  Q
    ||||||||| ||| ||||    
T  48999844 cctgaaagggcgtgatgt 48999827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 79 - 300
Target Start/End: Complemental strand, 45152899 - 45152677
Alignment:
Q  79 agatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcc 177  Q
    ||||||||| ||||| | ||||||||  ||||||||| ||||||   |||||||||||| || ||| ||| || |||||||||||||||||||||| |||    
T  45152899 agatcacccatctccagttggctgagaacatgtagagcaaactccatgaaggccatagccacatccgctgtcgcaagaggcccaatgtctgtaggatgcc 45152800  T
Q  178 tgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagca 277  Q
    | |||| ||||| ||||||| || ||||||||| ||||| || | |||||| |   |||| | ||| ||||||||||||||||||||| |||||| | ||    
T  45152799 taggaacagtctggacatacccgaactgcctaagaacccgctctagcaagtaatgaacccgcatgtctttgccggccatgatccatctggagtaccaaca 45152700  T
Q  278 tatgtcctgaaaggacgtaatgt 300  Q
    |||||||||||||| ||| ||||    
T  45152699 tatgtcctgaaagggcgtgatgt 45152677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 160 - 300
Target Start/End: Original strand, 40553596 - 40553736
Alignment:
Q  160 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 259  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| || |||||||||||  ||| || |||   |||||||||||||    
T  40553596 caatgtctgtaggagccctgggaatagtctggacatactcgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgctgccggccatgat 40553695  T
Q  260 ccatctagagtactagcatatgtcctgaaaggacgtaatgt 300  Q
    |||||  |||||| |||||||||| ||||||| ||| ||||    
T  40553696 ccatccggagtaccagcatatgtcatgaaagggcgtgatgt 40553736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 312
Target Start/End: Original strand, 3375894 - 3376131
Alignment:
Q  75 aactagatcacccctctcctgctggctgagggcatgtagagaaa-ctctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 173  Q
    ||||||||||||| ||||||||||||||||| |||||||||||| |||   ||||| |||||| || ||| ||| |  |||||||||||| |||||||||    
T  3375894 aactagatcaccc-tctcctgctggctgaggacatgtagagaaaactccatgaaggtcatagccacctcctctggcacaagaggcccaatatctgtagga 3375992  T
Q  174 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 273  Q
    |  ||||||  ||||| |||||||  ||| ||||||| ||||| || |||||||||||  ||| || ||| | | ||||||||||||||||  ||||||     
T  3375993 gctctgggaccagtctggacatacatgtattgcctaagaacccgctctggcaagtgacggaccatcctgtctctaccggccatgatccatccggagtacc 3376092  T
Q  274 agcatatgtcctgaaaggacgtaatgtcttgttgtctct 312  Q
    |  ||||||||||||||| ||  |||||| || ||||||    
T  3376093 aaaatatgtcctgaaagggcgccatgtctcgtcgtctct 3376131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 160 - 289
Target Start/End: Original strand, 33297214 - 33297343
Alignment:
Q  160 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 259  Q
    ||||||||||||||| |||||||||||||| | ||||| |||||||||||| ||||| || |||||||||||  ||| || |||   || ||||||||||    
T  33297214 caatgtctgtaggagccctgggaatagtctggtcatacccgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgctgtcggccatgat 33297313  T
Q  260 ccatctagagtactagcatatgtcctgaaa 289  Q
    |||||  |||||| ||||||||||||||||    
T  33297314 ccatccggagtaccagcatatgtcctgaaa 33297343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 45153005 - 45152954
Alignment:
Q  19 ctgtgtagtcaggaatggacgcatggaggttcataataggatgtgatactcta 71  Q
    |||||||||||||||||| |||| || |||||| |||||||||||||||||||    
T  45153005 ctgtgtagtcaggaatggccgcaggg-ggttcacaataggatgtgatactcta 45152954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 3375795 - 3375845
Alignment:
Q  23 gtagtcaggaatggacgcatggaggttcataataggatgtgatactctaca 73  Q
    |||||||||||||| |||| || |||||| ||||||||||| |||||||||    
T  3375795 gtagtcaggaatggccgcaggggggttcacaataggatgtgctactctaca 3375845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 79 - 312
Target Start/End: Original strand, 180324 - 180558
Alignment:
Q  79 agatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcc 177  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||   ||||| |||||| | ||||||||||  |||||||||||||| |||||||||||    
T  180324 agatcacccctctcctgctggctgaggacatgtagagcaaactccatgaaggtcatagccatgtcccctgccacaagaggcccaatgtttgtaggaggcc 180423  T
Q  178 tgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagca 277  Q
    |||||| ||||||||||||| |||||||||||| ||||| || |||||||||||| |||||| ||| |||| |||||||||||||||  |||||| | ||    
T  180424 tgggaacagtctagacatacccgtactgcctaagaacccgctctggcaagtgacagaccctcctgtctttggcggccatgatccatccggagtaccaaca 180523  T
Q  278 tatgtcctgaaaggacgtaatgtcttgttgtctct 312  Q
    |||||||||||||| | |||||||| || ||||||    
T  180524 tatgtcctgaaagggcataatgtctcgtcgtctct 180558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 81 - 300
Target Start/End: Complemental strand, 12627641 - 12627421
Alignment:
Q  81 atcacccctctcctgctggctgagggcatgtagagaaa-ctctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctg 179  Q
    |||||||||||  || ||||||||| |||||||||||| |||   |||||||||||| ||  || ||| || || || ||||||||||||||||||||||    
T  12627641 atcacccctctgttgttggctgaggacatgtagagaaaactccatgaaggccatagccaccgcctctggcgcaacagtcccaatgtctgtaggaggcctg 12627542  T
Q  180 ggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcata 279  Q
    |||| ||||| | |||||  ||||||| ||| |||||||| |||||||||||  ||| || ||| |||||||||||||||||||||||||||| | ||||    
T  12627541 ggaacagtctgggcatacctgtactgcataagaacccactctggcaagtgacgaaccatcctgtctttgccggccatgatccatctagagtaccaccata 12627442  T
Q  280 tgtcctgaaaggacgtaatgt 300  Q
    |||||| ||||| ||| ||||    
T  12627441 tgtcctaaaagggcgtcatgt 12627421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 74 - 312
Target Start/End: Original strand, 1326840 - 1327079
Alignment:
Q  74 aaactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagg 172  Q
    |||| ||||||||||||||||| ||||||||| ||||||||| ||||||   ||||||| || | || ||||||| ||  ||||||||||||||||||||    
T  1326840 aaaccagatcacccctctcctgttggctgaggacatgtagagcaaactccatgaaggccgtaaccacctcccctggcgccagaggcccaatgtctgtagg 1326939  T
Q  173 aggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtac 272  Q
    |||| || ||| | | | ||||||| | |||||||||| | |||  | |||||||||||  |||||||||| | ||| ||||||||||||||  ||||||    
T  1326940 aggcatgtgaacaatttggacatacccatactgcctaaaatcccgttctggcaagtgacggaccctcttgtctctgcaggccatgatccatccggagtac 1327039  T
Q  273 tagcatatgtcctgaaaggacgtaatgtcttgttgtctct 312  Q
     | ||||||||||||||||  ||||||||| || ||||||    
T  1327040 caacatatgtcctgaaagggtgtaatgtctcgtcgtctct 1327079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 291
Target Start/End: Complemental strand, 38457624 - 38457493
Alignment:
Q  160 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 259  Q
    |||||||||||||||  |||||||||||||  | |||| |||||||||||| |||| ||| |||||||||||  ||| || |||   |||||||||||||    
T  38457624 caatgtctgtaggagcgctgggaatagtctgaatatacccgtactgcctaagaaccaactctggcaagtgacggaccatcatgtcgctgccggccatgat 38457525  T
Q  260 ccatctagagtactagcatatgtcctgaaagg 291  Q
    |||||  |||||| ||||||||||||||||||    
T  38457524 ccatccggagtaccagcatatgtcctgaaagg 38457493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 81 - 264
Target Start/End: Complemental strand, 26653712 - 26653528
Alignment:
Q  81 atcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctg 179  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||    |||| ||| || |||||  || | | |||||||||||||| ||||| ||| |||    
T  26653712 atcacccctctcctgctggttgaggacatgtagagcaaactccatcaaggtcattgccacgtcatctactgcaagaggcccaatgtatgtagaaggtctg 26653613  T
Q  180 ggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatc 264  Q
    |||||||||| ||||||| |||||||||||| |||||  | |||||||||||| ||||||| ||  |||||||||||||||||||    
T  26653612 ggaatagtctggacatacccgtactgcctaagaacccgttctggcaagtgacagaccctctagtcattgccggccatgatccatc 26653528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 81 - 264
Target Start/End: Complemental strand, 26925297 - 26925113
Alignment:
Q  81 atcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctg 179  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||    |||| ||| || |||||  || | | |||||||||||||| ||||| ||| |||    
T  26925297 atcacccctctcctgctggttgaggacatgtagagcaaactccatcaaggtcattgccacgtcatctactgcaagaggcccaatgtatgtagaaggtctg 26925198  T
Q  180 ggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatc 264  Q
    |||||||||| ||||||| |||||||||||| |||||  | |||||||||||| ||||||| ||  |||||||||||||||||||    
T  26925197 ggaatagtctggacatacccgtactgcctaagaacccgttctggcaagtgacagaccctctagtcattgccggccatgatccatc 26925113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 84 - 290
Target Start/End: Complemental strand, 13274300 - 13274093
Alignment:
Q  84 acccctctcctgctggctgagggcatgtagagaaa-ctctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 182  Q
    |||||| ||||| ||||||||| |||||||||||| ||||| |||||||   || |||||  |  ||| || | || ||||| ||||||||| |||||||    
T  13274300 acccctatcctgatggctgaggacatgtagagaaaactctgtgaaggcctaggccacgtcatccaccgcaataagctcaatggctgtaggagccctggga 13274201  T
Q  183 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 282  Q
    ||||||| ||||||| |||||||||||| ||||| || |||||||||||  ||  || |||   ||||||||||||||||||| |||||| |||||||||    
T  13274200 atagtctggacatacccgtactgcctaagaacccgctctggcaagtgacggacaatcctgtcgctgccggccatgatccatctggagtaccagcatatgt 13274101  T
Q  283 cctgaaag 290  Q
    ||| ||||    
T  13274100 cctaaaag 13274093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 300
Target Start/End: Complemental strand, 2743137 - 2742997
Alignment:
Q  160 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 259  Q
    ||||||||||||||| |||| ||||||| | ||||||| |||||| ||||| ||||| || || |||||||   ||| || |||   |||||| ||||||    
T  2743137 caatgtctgtaggagccctgagaatagtttggacatacccgtacttcctaagaacccgctctgacaagtgatggaccatcctgtcgctgccggtcatgat 2743038  T
Q  260 ccatctagagtactagcatatgtcctgaaaggacgtaatgt 300  Q
    |||||  |||||| |||||||||||||||||| ||| ||||    
T  2743037 ccatccggagtaccagcatatgtcctgaaagggcgtgatgt 2742997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 21101479 - 21101423
Alignment:
Q  160 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataaccc 216  Q
    ||||||||||||||| ||| |||||||||| ||||||| |||||||||||| |||||    
T  21101479 caatgtctgtaggagccctaggaatagtctggacatacacgtactgcctaagaaccc 21101423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 26653833 - 26653769
Alignment:
Q  7 gatggacatcaactgtgtagtcaggaatggacgcatggaggttcataataggatgtgatactcta 71  Q
    ||||| ||||||||||||||||||||||||   || || |||||| |||||||||||||||||||    
T  26653833 gatgggcatcaactgtgtagtcaggaatggctacaggggggttcacaataggatgtgatactcta 26653769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 26925418 - 26925354
Alignment:
Q  7 gatggacatcaactgtgtagtcaggaatggacgcatggaggttcataataggatgtgatactcta 71  Q
    ||||| ||||||||||||||||||||||||   || || |||||| |||||||||||||||||||    
T  26925418 gatgggcatcaactgtgtagtcaggaatggctacaggggggttcacaataggatgtgatactcta 26925354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 289
Target Start/End: Original strand, 24209211 - 24209332
Alignment:
Q  168 gtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctag 267  Q
    |||||||| ||| |||| |||||| |||| ||||||||||| | ||||| || |||||||||||    | || ||| |||| ||| |||||||||||  |    
T  24209211 gtaggaggtctgtgaatggtctaggcatagtcgtactgcctcagaacccgctctggcaagtgacggcacatcctgtctttgtcggtcatgatccatccgg 24209310  T
Q  268 agtactagcatatgtcctgaaa 289  Q
    ||||| ||||||||||| ||||    
T  24209311 agtaccagcatatgtcccgaaa 24209332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 21101672 - 21101616
Alignment:
Q  16 caactgtgtagtcaggaatggacgc-atggaggttcataataggatgtgatactcta 71  Q
    ||||||||||||||||||||| ||| | || |||||| ||||||||| |||||||||    
T  21101672 caactgtgtagtcaggaatggccgcaaggggggttcacaataggatgcgatactcta 21101616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 300
Target Start/End: Original strand, 37227721 - 37227947
Alignment:
Q  75 aactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 173  Q
    |||| ||| |||||| || || ||||||||| ||||||||| |||||| | |||||||   || |||||  | |||| || | || ||||||||||||||    
T  37227721 aactggatgacccctatcttgatggctgaggacatgtagagcaaactccgtgaaggcctgggccacgtcatccgccgcaataagctcaatgtctgtagga 37227820  T
Q  174 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 273  Q
    | |||||||||||||| ||||||| |||||||||||| ||||| || ||||||||||   ||| || |||   || |||||||||||||||  |||||||    
T  37227821 gccctgggaatagtctggacatacccgtactgcctaagaacccgctctggcaagtgagggaccatcctgtcgatgtcggccatgatccatccggagtact 37227920  T
Q  274 agcatatgtcctgaaaggacgtaatgt 300  Q
    |||||||||||| ||||| ||| ||||    
T  37227921 agcatatgtcctaaaagggcgtgatgt 37227947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 291
Target Start/End: Complemental strand, 14096846 - 14096700
Alignment:
Q  145 ctgccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgta 244  Q
    |||||| |||| || |||||||||||||||||  ||||||||||| |||||||  ||||||||||| || || || |||||||||||  ||| |  |||     
T  14096846 ctgccgcaagaagctcaatgtctgtaggaggcaagggaatagtctggacatacctgtactgcctaagaaaccgctctggcaagtgacggaccattatgtc 14096747  T
Q  245 tttgccggccatgatccatctagagtactagcatatgtcctgaaagg 291  Q
      || |||||||||||||||| |||||||||| ||||||||||||||    
T  14096746 gctgtcggccatgatccatctggagtactagcttatgtcctgaaagg 14096700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 37227623 - 37227670
Alignment:
Q  24 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 71  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  37227623 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 37227670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 75 - 291
Target Start/End: Original strand, 31116886 - 31117103
Alignment:
Q  75 aactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 173  Q
    |||| ||| |||||||| ||| ||||||||| ||||||||| |||||||  ||||| |   || |||||  ||||||||||||||  |||||||||||||    
T  31116886 aactggataacccctctgctgatggctgaggacatgtagagcaaactctatgaaggtctgggccacgtcatctgccgtaagaggcttaatgtctgtagga 31116985  T
Q  174 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 273  Q
    ||||||||    |||| ||||||| |||||||||||| |||| ||| |||||||||||| ||| || | | | || |||||||||||||||   |||||     
T  31116986 ggcctgggccgtgtctggacatacccgtactgcctaagaaccgactctggcaagtgacagaccatcctatctctgtcggccatgatccatccgaagtacc 31117085  T
Q  274 agcatatgtcctgaaagg 291  Q
    ||||||| ||||||||||    
T  31117086 agcatatatcctgaaagg 31117103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 312
Target Start/End: Complemental strand, 28035766 - 28035635
Alignment:
Q  181 gaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatat 280  Q
    ||||||||| ||||||| | |||||||||| ||||| || | |||||||||  ||| || |||   |||||||||||||| |||  |||||| |||||||    
T  28035766 gaatagtctggacatacccctactgcctaagaacccgctctagcaagtgacggaccatcatgtcgctgccggccatgatctatccggagtaccagcatat 28035667  T
Q  281 gtcctgaaaggacgtaatgtcttgttgtctct 312  Q
    ||| ||||||| ||| |||| |||| ||||||    
T  28035666 gtcttgaaagggcgtgatgtgttgtcgtctct 28035635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 28035972 - 28035925
Alignment:
Q  24 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 71  Q
    ||||||||||||| ||||||| |||||| |||||||||||||||||||    
T  28035972 tagtcaggaatggccgcatgggggttcacaataggatgtgatactcta 28035925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 31116777 - 31116835
Alignment:
Q  13 catcaactgtgtagtcaggaatggacgcatggaggttcataataggatgtgatactcta 71  Q
    ||||| ||| |||||||||||||| |||| || |||||| |||||||||||||||||||    
T  31116777 catcagctgcgtagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 31116835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 169 - 291
Target Start/End: Complemental strand, 25147466 - 25147344
Alignment:
Q  169 taggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctaga 268  Q
    |||||| | |||||||||||| ||||||| |||||||||||| ||||| || |||||||||||| ||| || |||   ||||||||||||||||||  ||    
T  25147466 taggagccatgggaatagtctggacatacccgtactgcctaagaacccgctctggcaagtgacagaccatcctgtcgctgccggccatgatccatccgga 25147367  T
Q  269 gtactagcatatgtcctgaaagg 291  Q
    |||| ||||||||||||||||||    
T  25147366 gtaccagcatatgtcctgaaagg 25147344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 300
Target Start/End: Original strand, 42705139 - 42705356
Alignment:
Q  84 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 182  Q
    |||||||| ||| ||||||||| ||||||||| |||||| | |||||||   || |||||  ||| || || | || ||||||||||||||| |||||||    
T  42705139 acccctctgctgatggctgaggacatgtagagcaaactccgtgaaggcctgggccacgtcatctgtcgcaataagctcaatgtctgtaggagccctggga 42705238  T
Q  183 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 282  Q
    ||||| | ||||| | |||||||||||| ||||| || |||||||||||  ||| || |||   ||||| ||||||||||||  |||||| | |||||||    
T  42705239 atagtatggacatgcccgtactgcctaagaacccgctctggcaagtgacggaccttcatgtcgctgccgcccatgatccatccggagtaccaacatatgt 42705338  T
Q  283 cctgaaaggacgtaatgt 300  Q
    ||||||||| ||| ||||    
T  42705339 cctgaaagggcgtgatgt 42705356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 160 - 301
Target Start/End: Complemental strand, 39465486 - 39465347
Alignment:
Q  160 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 259  Q
    |||||||||||| || |||| ||||||||  ||||||| | |||||||||| ||||  || |||||||| ||  ||| || |||   |||||||||||||    
T  39465486 caatgtctgtagaagccctgagaatagtc--gacatacccatactgcctaagaaccggctctggcaagttacggaccatcctgtcgctgccggccatgat 39465389  T
Q  260 ccatctagagtactagcatatgtcctgaaaggacgtaatgtc 301  Q
    |||||  ||||||||||||||||||||||||| ||| |||||    
T  39465388 ccatccggagtactagcatatgtcctgaaagggcgtgatgtc 39465347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 3681143 - 3681088
Alignment:
Q  24 tagtcaggaatggacgcatggaggttcataataggatgtgatactctacaaaacta 79  Q
    ||||||||||||| |||| || |||||||||||||||||||||||||| |||||||    
T  3681143 tagtcaggaatggtcgcaggggggttcataataggatgtgatactctaaaaaacta 3681088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 25147659 - 25147612
Alignment:
Q  24 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 71  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  25147659 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 25147612  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 32305590 - 32305637
Alignment:
Q  24 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 71  Q
    ||||||||||||| | ||||| |||||| |||||||||||||||||||    
T  32305590 tagtcaggaatggccacatgggggttcacaataggatgtgatactcta 32305637  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 39465670 - 39465623
Alignment:
Q  24 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 71  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  39465670 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 39465623  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 300
Target Start/End: Original strand, 32307880 - 32307986
Alignment:
Q  194 atactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaaggac 293  Q
    |||| |||||||||||| ||||| ||  ||||||||||  ||| || |||   || |||||||||||||||  |||||| |||||||||||| ||||| |    
T  32307880 atacccgtactgcctaagaacccgctcaggcaagtgacggaccatcctgtcgctgtcggccatgatccatccggagtaccagcatatgtcctcaaagggc 32307979  T
Q  294 gtaatgt 300  Q
    || ||||    
T  32307980 gtgatgt 32307986  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 300
Target Start/End: Complemental strand, 3680918 - 3680825
Alignment:
Q  207 ctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaaggacgtaatgt 300  Q
    |||| ||||| || |||||||||||  ||| ||||||   ||||||||||||||||||  ||||||||| || |||||| ||||| ||| ||||    
T  3680918 ctaagaacccgctctggcaagtgacggaccatcttgtcgctgccggccatgatccatccggagtactagtatgtgtcctcaaagggcgtgatgt 3680825  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 32305774 - 32305811
Alignment:
Q  160 caatgtctgtaggaggcctgggaatagtctagacatac 197  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  32305774 caatgtctgtaggagccctgggaatagtctggacatac 32305811  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 42705035 - 42705079
Alignment:
Q  27 tcaggaatggacgcatggaggttcataataggatgtgatactcta 71  Q
    |||||||||| |||| || |||||| |||||||||||||||||||    
T  42705035 tcaggaatggccgcaggggggttcacaataggatgtgatactcta 42705079  T

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Target: scaffold0251 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 80 - 291
Target Start/End: Original strand, 16977 - 17192
Alignment:
Q  80 gatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggcca--tag-ctacgtcccctgccgtaagaggcccaatgtctgtaggagg 175  Q
    |||||||||||| ||| ||||||||| ||||||||| |||||||| ||||| ||  ||| | | |||  |||||| || | ||  ||||||||||||||     
T  16977 gatcacccctctactgatggctgaggacatgtagagcaaactctgtgaagggcacctaggccatgtcatctgccgcaataagctaaatgtctgtaggagc 17076  T
Q  176 cctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactag 275  Q
    ||| |||||||||| ||||||| |||||| ||||| ||||| || ||| |||||||  ||| || |||   ||| |||||||||||||| ||||||| ||    
T  17077 cctcggaatagtctggacatacccgtactacctaacaacccgctctggaaagtgacggaccatcctgtcgctgctggccatgatccatccagagtaccag 17176  T
Q  276 catatgtcctgaaagg 291  Q
    ||||||||||||||||    
T  17177 catatgtcctgaaagg 17192  T

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Target: scaffold0251; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 16875 - 16922
Alignment:
Q  24 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 71  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  16875 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 16922  T

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Target: scaffold0408 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 291
Target Start/End: Complemental strand, 7188 - 7042
Alignment:
Q  145 ctgccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgta 244  Q
    |||||| |||| || |||||||||||||||||  ||||||||||| |||||||  ||||||||||| || || || |||||||||||  ||| |  |||     
T  7188 ctgccgcaagaagctcaatgtctgtaggaggcaagggaatagtctggacatacctgtactgcctaagaaaccgctctggcaagtgacggaccattatgtc 7089  T
Q  245 tttgccggccatgatccatctagagtactagcatatgtcctgaaagg 291  Q
      || |||||||||||||||| |||||||||| ||||||||||||||    
T  7088 gctgtcggccatgatccatctggagtactagcttatgtcctgaaagg 7042  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 160 - 300
Target Start/End: Original strand, 6285814 - 6285954
Alignment:
Q  160 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 259  Q
    |||||||| |||||| |||||||||||||| ||||||| |||||||||||| ||||| || || ||||||||  ||| || | |   |||  ||||||||    
T  6285814 caatgtctataggagccctgggaatagtctggacatacccgtactgcctaagaacccgctctgccaagtgacggaccatcctatcgctgctagccatgat 6285913  T
Q  260 ccatctagagtactagcatatgtcctgaaaggacgtaatgt 300  Q
    |||||| |||||| |||||||||||| ||||| ||| ||||    
T  6285914 ccatctggagtaccagcatatgtcctcaaagggcgtgatgt 6285954  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 264
Target Start/End: Complemental strand, 35014454 - 35014337
Alignment:
Q  147 gccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatt 246  Q
    ||||||| | || |||||| |||| ||| |||| ||||||||| ||||||| |||||||||||| ||||| || |||||||||||  ||| || |||  |    
T  35014454 gccgtaataagctcaatgtatgtacgagccctgtgaatagtctggacatacccgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgt 35014355  T
Q  247 tgccggccatgatccatc 264  Q
    ||||| ||||||||||||    
T  35014354 tgccgaccatgatccatc 35014337  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 289
Target Start/End: Complemental strand, 2029818 - 2029728
Alignment:
Q  199 cgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaa 289  Q
    |||||||||| | ||||| || |||||||||||  ||| |||| | |||||||||||||||||||| ||| ||| |||| | |||||||||    
T  2029818 cgtactgcctcagaacccgctctggcaagtgacgcaccatcttctgtttgccggccatgatccatccagaataccagcacacgtcctgaaa 2029728  T

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Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 257345 - 257416
Alignment:
Q  160 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgac 231  Q
    |||||||||| |||| |||| ||||||||| ||||||| |||||| ||||| ||||| || |||||||||||    
T  257345 caatgtctgtgggagccctgagaatagtctggacatacccgtactacctaagaacccgctctggcaagtgac 257416  T

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Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 289
Target Start/End: Original strand, 32353 - 32451
Alignment:
Q  191 gacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaa 289  Q
    |||||||  ||||| ||||| ||||| || |||||||||||  ||| || ||| | ||  ||||||||||||||| |||||| ||||||||||||||||    
T  32353 gacatacctgtactacctaagaacccgctctggcaagtgacggaccatcatgtctctgttggccatgatccatctggagtaccagcatatgtcctgaaa 32451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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