View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11579_low_29 (Length: 249)
Name: NF11579_low_29
Description: NF11579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11579_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 22 - 239
Target Start/End: Complemental strand, 26357782 - 26357565
Alignment:
| Q |
22 |
tatcagtgttgtacaaccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatcttt |
121 |
Q |
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| T |
26357782 |
tatcagtgttgtacaaccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttagtaatagcttgttgaatcttt |
26357683 |
T |
|
| Q |
122 |
aggtattgcatcagttcttagttcttactcttggttatgtataattgttgctcaatttctgttccctgctcaacttaattgtactatatcactcgctatg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26357682 |
aggtattgcatcagttcttagttcttactcttggttatgtataattgttgctcaatttctgttccctgctcaacttaattgtactatatcactcgctatg |
26357583 |
T |
|
| Q |
222 |
cataactgttgctctctg |
239 |
Q |
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|||||||||||||||||| |
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| T |
26357582 |
cataactgttgctctctg |
26357565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 51759631 - 51759446
Alignment:
| Q |
1 |
attactagcatacatgtttgatatcagtgttgtacaaccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttg |
100 |
Q |
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| T |
51759631 |
attactagcttacatgtatgatatcagttttgtacaaccaacttttgatttggaatgttagtataacagttggatgctgcccttttgatttagagtgtta |
51759532 |
T |
|
| Q |
101 |
gtaatagcttgttgaatctttaggtattgcatcagttcttagttcttactcttggttatgtataattgttgctcaatttctgttccctgctca |
193 |
Q |
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| T |
51759531 |
gtaatagcttgttgaatctttagatactgcatcagtt-------cttactcttggttatgtataattgttgcttaatttatgttcccagctca |
51759446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 6685031 - 6684843
Alignment:
| Q |
1 |
attactagcatacatgtttgatatcagtgttgtacaaccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttg |
100 |
Q |
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||||||||| ||||||| |||||||||| |||||||||||||||||||||||| || ||||||||||| ||||||||| |||||||||||| ||||||| |
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| T |
6685031 |
attactagcttacatgtatgatatcagttttgtacaaccaacttttgatttggaatattagtataacagttggatgctgcccttttgatttagagtgtta |
6684932 |
T |
|
| Q |
101 |
gtaatagcttgttgaatctttaggtattgcatcagttcttagttcttactcttggttatgtataattgttgctcaatttctgttccctgctcaact |
196 |
Q |
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| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| ||||||| |||||||| |
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| T |
6684931 |
ggtatagcttgttgaatctttaggtactgcatcagtt-------cttactcttggttatgtataattgttgcataatttatgttcccagctcaact |
6684843 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 30822006 - 30821828
Alignment:
| Q |
1 |
attactagcatacatgtttgatatcagtgttgtacaaccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttg |
100 |
Q |
| |
|
||||||||| ||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||| ||||||| |
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| T |
30822006 |
attactagcttacatgtatgatatcagttttgtacaaccaacttttgatttggaatgttagtataacagttggatgctgcccttttgattaagagtgtta |
30821907 |
T |
|
| Q |
101 |
gtaatagcttgttgaatctttaggtattgcatcagttcttagttcttactcttggttatgtataattgttgctcaatttctgttcc |
186 |
Q |
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|
||||||||||||||||| |||||||| || ||||||| ||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
30821906 |
gtaatagcttgttgaatatttaggtactgaatcagtt-------cttactcttggttatttataattgttgcttaatttctgttcc |
30821828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 12592709 - 12592521
Alignment:
| Q |
1 |
attactagcatacatgtttgatatcagtgttgtacaaccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttg |
100 |
Q |
| |
|
||||||||| ||||||| || ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||| | |||| |
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| T |
12592709 |
attactagcttacatgtatgttatcagttttgtacaaccaacttttgatttggaatgttagtataacagttggatgctgcccttttgatttagtttgtta |
12592610 |
T |
|
| Q |
101 |
gtaatagcttgttgaatctttaggtattgcatcagttcttagttcttactcttggttatgtataattgttgctcaatttctgttccctgctcaact |
196 |
Q |
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|||||||||| ||||||||||||||| | |||| | ||||| ||||||||||||||||||| ||||| ||||||||||||| |||||||| |
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| T |
12592609 |
gtaatagcttattgaatctttaggtactacatc-------aattctttctcttggttatgtataattattgcttaatttctgttcccagctcaact |
12592521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 30812744 - 30812556
Alignment:
| Q |
1 |
attactagcatacatgtttgatatcagtgttgtacaaccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttg |
100 |
Q |
| |
|
||||||||| ||||||| |||||| ||| |||||||||||| |||||||||| |||||||||||||| ||||||| | |||| |||||| ||||||| |
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| T |
30812744 |
attactagcttacatgtatgatattagttttgtacaaccaatttttgatttgaaatgttagtataacagttggatgttgccctgttgattaagagtgtta |
30812645 |
T |
|
| Q |
101 |
gtaatagcttgttgaatctttaggtattgcatcagttcttagttcttactcttggttatgtataattgttgctcaatttctgttccctgctcaact |
196 |
Q |
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|
|||||||||||||||||||||||||| || ||||||| ||||||||||||||| ||||||||||||| ||||| ||||||| |||||||| |
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| T |
30812644 |
gtaatagcttgttgaatctttaggtactgaatcagtt-------cttactcttggttatttataattgttgcttaatttatgttcccagctcaact |
30812556 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 196
Target Start/End: Complemental strand, 27810735 - 27810568
Alignment:
| Q |
6 |
tagcatacatgtttgatatcagtgttgtacaaccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttggtaat |
105 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||||||||||||||||| |||||| || |||||||||||| ||||||| ||||| |
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| T |
27810735 |
tagcttacatgtatgatatcagttttgtacaaccaacttttgatttggaatgtta----------------ctgcccttttgatttagagtgttagtaat |
27810652 |
T |
|
| Q |
106 |
agcttgttgaatctttaggtattgcatcagttcttagttcttactcttggttatgtataattgttgctcaatttctgttccctgctcaact |
196 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||||||| ||||||| |
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|
| T |
27810651 |
agcttgttgaatctttaggtactgcatcagtt-------cttactcttggttatttataattgttgcttaatttctgttcccatctcaact |
27810568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 2942525 - 2942576
Alignment:
| Q |
145 |
cttactcttggttatgtataattgttgctcaatttctgttccctgctcaact |
196 |
Q |
| |
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||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |
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| T |
2942525 |
cttactcttggttatgtatgattgttgcttaatttctgttcccagctcaact |
2942576 |
T |
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