View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11579_low_32 (Length: 222)
Name: NF11579_low_32
Description: NF11579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11579_low_32 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: scaffold0229 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 16674 - 16548
Alignment:
| Q |
1 |
atggtaaaaactagaaaattattgaatgcaaattggttataactcttggtggtattttggggaaactcttaacaatcctcggacaccacaattgtgaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
16674 |
atggtaaaaactagaaaattattgaatgcaaattggttataactcttggtggtattttggggaaactcttaacaatcctcaaacatcacaattgtgaaac |
16575 |
T |
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| Q |
101 |
ataaacaaagatgaacggaatgctgag |
127 |
Q |
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||||||||||||||||||||||||||| |
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| T |
16574 |
ataaacaaagatgaacggaatgctgag |
16548 |
T |
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Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 1401684 - 1401810
Alignment:
| Q |
1 |
atggtaaaaactagaaaattattgaatgcaaattggttataactcttggtggtattttggggaaactcttaacaatcctcggacaccacaattgtgaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
1401684 |
atggtaaaaactagaaaattattgaatgcaaattggttataactcttggtggtattttggggaaactcttaacaatcctcaaacatcacaattgtgaaac |
1401783 |
T |
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| Q |
101 |
ataaacaaagatgaacggaatgctgag |
127 |
Q |
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||||||||||||||||||||||||||| |
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| T |
1401784 |
ataaacaaagatgaacggaatgctgag |
1401810 |
T |
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