View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11579_low_33 (Length: 220)
Name: NF11579_low_33
Description: NF11579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11579_low_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 32024990 - 32024805
Alignment:
| Q |
15 |
acatcaaacataaacccaaatcaacaaattaaatagaaaacaacccaaaagaagtcaaacacacagatcatcaaaattccatttaatcacacagttcaac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32024990 |
acatcaaacataaacccaaatcaacaaattaaatagaaaacaacccaaaagaagtcaaacacacagatcatcaaaattccatttaatcacacagttcaac |
32024891 |
T |
|
| Q |
115 |
ccaaaagagactcacatatctattttcctcattattaaagattatcaaaggtcaacgaacaaactaagtgtatgtttggtttgtcttctt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32024890 |
ccaaaagagactcacatatctattttcctcattattaaagattatcaaaggtc----aacaaactaagtgtatgtttggtttgtcttctt |
32024805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 32026389 - 32026304
Alignment:
| Q |
48 |
tagaaaacaacccaaaagaagtcaaacacacagatcatcaaaattccatttaatcacacagttcaacccaaaagagactcacatat |
133 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||| |||||| ||| ||| || || |||||||||| |||||||| |
|
|
| T |
32026389 |
tagaaaacaaccaaaatgaagtcaaacacacagatcatcaaaatttcatttactcatacacttaaatccaaaagagattcacatat |
32026304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University